{"id":"https://openalex.org/W4297256900","doi":"https://doi.org/10.1093/bioinformatics/btac647","title":"Homologue series detection and management in LC-MS data with <i>homologueDiscoverer</i>","display_name":"Homologue series detection and management in LC-MS data with <i>homologueDiscoverer</i>","publication_year":2022,"publication_date":"2022-09-23","ids":{"openalex":"https://openalex.org/W4297256900","doi":"https://doi.org/10.1093/bioinformatics/btac647","pmid":"https://pubmed.ncbi.nlm.nih.gov/36165687"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac647","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac647","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/22/5139/47153835/btac647.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/22/5139/47153835/btac647.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068790842","display_name":"Kevin Mildau","orcid":"https://orcid.org/0000-0001-7776-0890"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Kevin Mildau","raw_affiliation_strings":["Department of Analytical Chemistry, University of Vienna , Vienna A-1090, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Analytical Chemistry, University of Vienna , Vienna A-1090, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075156076","display_name":"Justin J. J. van der Hooft","orcid":"https://orcid.org/0000-0002-9340-5511"},"institutions":[{"id":"https://openalex.org/I24027795","display_name":"University of Johannesburg","ror":"https://ror.org/04z6c2n17","country_code":"ZA","type":"education","lineage":["https://openalex.org/I24027795"]},{"id":"https://openalex.org/I913481162","display_name":"Wageningen University & Research","ror":"https://ror.org/04qw24q55","country_code":"NL","type":"education","lineage":["https://openalex.org/I913481162"]}],"countries":["NL","ZA"],"is_corresponding":false,"raw_author_name":"Justin J J van der Hooft","raw_affiliation_strings":["Bioinformatics Group, Wageningen University , Wageningen 6708PB, the Netherlands","Department of Biochemistry, University of Johannesburg, Auckland Park , Johannesburg 2006, South Africa"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Group, Wageningen University , Wageningen 6708PB, the Netherlands","institution_ids":["https://openalex.org/I913481162"]},{"raw_affiliation_string":"Department of Biochemistry, University of Johannesburg, Auckland Park , Johannesburg 2006, South Africa","institution_ids":["https://openalex.org/I24027795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077392583","display_name":"Mira Flasch","orcid":"https://orcid.org/0000-0002-3518-3885"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Mira Flasch","raw_affiliation_strings":["Department of Food Chemistry and Toxicology, University of Vienna , Vienna A-1090, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Food Chemistry and Toxicology, University of Vienna , Vienna A-1090, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041929818","display_name":"Benedikt Warth","orcid":"https://orcid.org/0000-0002-6104-0706"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Benedikt Warth","raw_affiliation_strings":["Department of Food Chemistry and Toxicology, University of Vienna , Vienna A-1090, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Food Chemistry and Toxicology, University of Vienna , Vienna A-1090, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010916495","display_name":"Yasin El Abiead","orcid":"https://orcid.org/0000-0003-4392-7706"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Yasin El Abiead","raw_affiliation_strings":["Department of Analytical Chemistry, University of Vienna , Vienna A-1090, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Analytical Chemistry, University of Vienna , Vienna A-1090, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017604548","display_name":"Gunda Koellensperger","orcid":"https://orcid.org/0000-0002-1460-4919"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Gunda Koellensperger","raw_affiliation_strings":["Department of Analytical Chemistry, University of Vienna , Vienna A-1090, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Analytical Chemistry, University of Vienna , Vienna A-1090, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053663717","display_name":"J\u00fcrgen Zanghellini","orcid":"https://orcid.org/0000-0002-1964-2455"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"J\u00fcrgen Zanghellini","raw_affiliation_strings":["Department of Analytical Chemistry, University of Vienna , Vienna A-1090, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Analytical Chemistry, University of Vienna , Vienna A-1090, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112865359","display_name":"Christoph B\u00fcschl","orcid":null},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Christoph B\u00fcschl","raw_affiliation_strings":["Department of Analytical Chemistry, University of Vienna , Vienna A-1090, Austria"],"affiliations":[{"raw_affiliation_string":"Department of Analytical Chemistry, University of Vienna , Vienna A-1090, Austria","institution_ids":["https://openalex.org/I129774422"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5053663717","https://openalex.org/A5068790842","https://openalex.org/A5112865359"],"corresponding_institution_ids":["https://openalex.org/I129774422"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7817,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.69469862,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"38","issue":"22","first_page":"5139","last_page":"5140"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11667","display_name":"Advanced Chemical Sensor Technologies","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.797141969203949},{"id":"https://openalex.org/keywords/redundancy","display_name":"Redundancy (engineering)","score":0.7054337859153748},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.609279215335846},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.5963674783706665},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.579297661781311},{"id":"https://openalex.org/keywords/series","display_name":"Series (stratigraphy)","score":0.5646114945411682},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.4775741398334503},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21536529064178467},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14407792687416077},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09719812870025635},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.08362901210784912}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.797141969203949},{"id":"https://openalex.org/C152124472","wikidata":"https://www.wikidata.org/wiki/Q1204361","display_name":"Redundancy (engineering)","level":2,"score":0.7054337859153748},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.609279215335846},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.5963674783706665},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.579297661781311},{"id":"https://openalex.org/C143724316","wikidata":"https://www.wikidata.org/wiki/Q312468","display_name":"Series (stratigraphy)","level":2,"score":0.5646114945411682},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.4775741398334503},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21536529064178467},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14407792687416077},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09719812870025635},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08362901210784912},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053719","descriptor_name":"Tandem Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btac647","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac647","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/22/5139/47153835/btac647.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36165687","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36165687","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9665864","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9665864","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:wur:oai:library.wur.nl:wurpubs/607393","is_oa":true,"landing_page_url":"https://research.wur.nl/en/publications/homologue-series-detection-and-management-in-lc-ms-data-with-homo","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 38(22), 5139 - 5140","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac647","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac647","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/22/5139/47153835/btac647.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Decent work and economic growth","score":0.7300000190734863,"id":"https://metadata.un.org/sdg/8"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321181","display_name":"Austrian Science Fund","ror":"https://ror.org/013tf3c58"},{"id":"https://openalex.org/F4320321691","display_name":"Universit\u00e4t Wien","ror":"https://ror.org/03prydq77"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4297256900.pdf","grobid_xml":"https://content.openalex.org/works/W4297256900.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W2591002382","https://openalex.org/W2892886165","https://openalex.org/W2894431730","https://openalex.org/W2950625953","https://openalex.org/W3010743207","https://openalex.org/W3194813944","https://openalex.org/W6734634073"],"related_works":["https://openalex.org/W2494338568","https://openalex.org/W1495042958","https://openalex.org/W1919101720","https://openalex.org/W2122678784","https://openalex.org/W2282510344","https://openalex.org/W139987158","https://openalex.org/W2183994405","https://openalex.org/W1875646599","https://openalex.org/W1976807322","https://openalex.org/W2349023125"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-04T08:04:53.788161","created_date":"2022-09-28T00:00:00"}