{"id":"https://openalex.org/W4295886202","doi":"https://doi.org/10.1093/bioinformatics/btac621","title":"Systematic comparison of ranking aggregation methods for gene lists in experimental results","display_name":"Systematic comparison of ranking aggregation methods for gene lists in experimental results","publication_year":2022,"publication_date":"2022-09-12","ids":{"openalex":"https://openalex.org/W4295886202","doi":"https://doi.org/10.1093/bioinformatics/btac621","pmid":"https://pubmed.ncbi.nlm.nih.gov/36094347"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac621","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac621","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/21/4927/46697906/btac621.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/21/4927/46697906/btac621.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100408063","display_name":"Bo Wang","orcid":"https://orcid.org/0000-0002-1580-797X"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Bo Wang","raw_affiliation_strings":["Roslin Institute, University of Edinburgh , Edinburgh EH25 9RG, UK"],"raw_orcid":"https://orcid.org/0000-0002-1580-797X","affiliations":[{"raw_affiliation_string":"Roslin Institute, University of Edinburgh , Edinburgh EH25 9RG, UK","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058543637","display_name":"Andy Law","orcid":"https://orcid.org/0000-0003-1868-2364"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Andy Law","raw_affiliation_strings":["Roslin Institute, University of Edinburgh , Edinburgh EH25 9RG, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Roslin Institute, University of Edinburgh , Edinburgh EH25 9RG, UK","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089370410","display_name":"Tim Regan","orcid":"https://orcid.org/0000-0002-0979-7875"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tim Regan","raw_affiliation_strings":["Roslin Institute, University of Edinburgh , Edinburgh EH25 9RG, UK"],"raw_orcid":"https://orcid.org/0000-0002-0979-7875","affiliations":[{"raw_affiliation_string":"Roslin Institute, University of Edinburgh , Edinburgh EH25 9RG, UK","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047229923","display_name":"Nick Parkinson","orcid":"https://orcid.org/0000-0001-6336-5654"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nicholas Parkinson","raw_affiliation_strings":["Roslin Institute, University of Edinburgh , Edinburgh EH25 9RG, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Roslin Institute, University of Edinburgh , Edinburgh EH25 9RG, UK","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021192497","display_name":"Joby Cole","orcid":"https://orcid.org/0000-0002-5258-5835"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Joby Cole","raw_affiliation_strings":["University of Sheffield , Sheffield S10 2NT, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Sheffield , Sheffield S10 2NT, UK","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083925448","display_name":"Clark D Russell","orcid":"https://orcid.org/0000-0002-9873-8243"},"institutions":[{"id":"https://openalex.org/I4210151647","display_name":"Centre for Inflammation Research","ror":"https://ror.org/05wcr1b38","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210151647","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I4210164624","display_name":"The Queen's Medical Research Institute","ror":"https://ror.org/059zxg644","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210164624","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Clark D Russell","raw_affiliation_strings":["Centre for Inflammation Research, The Queen\u2019s Medical Research Institute, University of Edinburgh , Edinburgh EH16 4TJ, UK"],"raw_orcid":"https://orcid.org/0000-0002-9873-8243","affiliations":[{"raw_affiliation_string":"Centre for Inflammation Research, The Queen\u2019s Medical Research Institute, University of Edinburgh , Edinburgh EH16 4TJ, UK","institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I4210164624","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014938248","display_name":"David H. Dockrell","orcid":"https://orcid.org/0000-0002-2718-4861"},"institutions":[{"id":"https://openalex.org/I4210151647","display_name":"Centre for Inflammation Research","ror":"https://ror.org/05wcr1b38","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087105","https://openalex.org/I4210151647","https://openalex.org/I90344618","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I4210164624","display_name":"The Queen's Medical Research Institute","ror":"https://ror.org/059zxg644","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210164624","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David H Dockrell","raw_affiliation_strings":["Centre for Inflammation Research, The Queen\u2019s Medical Research Institute, University of Edinburgh , Edinburgh EH16 4TJ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Inflammation Research, The Queen\u2019s Medical Research Institute, University of Edinburgh , Edinburgh EH16 4TJ, UK","institution_ids":["https://openalex.org/I4210151647","https://openalex.org/I4210164624","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038807284","display_name":"Michael U. Gutmann","orcid":"https://orcid.org/0000-0002-5329-9910"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Michael U Gutmann","raw_affiliation_strings":["School of Informatics, University of Edinburgh , Edinburgh EH8 9AB, UK"],"raw_orcid":"https://orcid.org/0000-0002-5329-9910","affiliations":[{"raw_affiliation_string":"School of Informatics, University of Edinburgh , Edinburgh EH8 9AB, UK","institution_ids":["https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030523023","display_name":"J. Kenneth Baillie","orcid":"https://orcid.org/0000-0001-5258-793X"},"institutions":[{"id":"https://openalex.org/I133960621","display_name":"Roslin Institute","ror":"https://ror.org/01920rj20","country_code":"GB","type":"facility","lineage":["https://openalex.org/I133960621","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I98677209"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"J Kenneth Baillie","raw_affiliation_strings":["Roslin Institute, University of Edinburgh , Edinburgh EH25 9RG, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Roslin Institute, University of Edinburgh , Edinburgh EH25 9RG, UK","institution_ids":["https://openalex.org/I133960621","https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5030523023","https://openalex.org/A5038807284","https://openalex.org/A5100408063"],"corresponding_institution_ids":["https://openalex.org/I133960621","https://openalex.org/I98677209"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.1261,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.76726838,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"38","issue":"21","first_page":"4927","last_page":"4933"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.43970000743865967,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.43970000743865967,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.427700012922287,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.011800000444054604,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.747462809085846},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5906228423118591},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43951287865638733},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36582809686660767},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3510740101337433},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2682695984840393}],"concepts":[{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.747462809085846},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5906228423118591},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43951287865638733},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36582809686660767},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3510740101337433},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2682695984840393}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002289","descriptor_name":"Carcinoma, Non-Small-Cell Lung","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002289","descriptor_name":"Carcinoma, Non-Small-Cell Lung","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002289","descriptor_name":"Carcinoma, Non-Small-Cell Lung","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002289","descriptor_name":"Carcinoma, Non-Small-Cell Lung","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002289","descriptor_name":"Carcinoma, Non-Small-Cell Lung","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015201","descriptor_name":"Meta-Analysis as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btac621","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac621","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/21/4927/46697906/btac621.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36094347","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36094347","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9620830","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9620830","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.ed.ac.uk:publications/3d3e0f15-38f7-4641-ab9e-69dba17424ca","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/3d3e0f15-38f7-4641-ab9e-69dba17424ca","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Wang, B, Law, A, Regan, T, Parkinson, N, Cole, J, Russell, C D, Dockrell, D H, Gutmann, M U & Baillie, J K 2022, 'Systematic comparison of ranking aggregation methods for gene lists in experimental results', Bioinformatics, vol. 38, no. 21, pp. 4927-4933. https://doi.org/10.1093/bioinformatics/btac621","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac621","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac621","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/21/4927/46697906/btac621.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G153372842","display_name":null,"funder_award_id":"BBS/E/D/10002071","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4219199536","display_name":"Optimising Innate Host Defence to Combat Antimicrobial Resistance","funder_award_id":"MR/N02995X/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G4815379115","display_name":null,"funder_award_id":"MR/N02995X/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G5580080036","display_name":"The function of genes and cellular phenotypes in animal systems","funder_award_id":"BBS/E/D/10002071","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7883209335","display_name":null,"funder_award_id":"BBS/E/D/10002070","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4295886202.pdf"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W566036147","https://openalex.org/W602980269","https://openalex.org/W1968634175","https://openalex.org/W1968917429","https://openalex.org/W1989277387","https://openalex.org/W1999657075","https://openalex.org/W2005852056","https://openalex.org/W2015845481","https://openalex.org/W2021581601","https://openalex.org/W2031797713","https://openalex.org/W2037411879","https://openalex.org/W2039133110","https://openalex.org/W2091015733","https://openalex.org/W2100039643","https://openalex.org/W2100097984","https://openalex.org/W2108874380","https://openalex.org/W2140138681","https://openalex.org/W2146511318","https://openalex.org/W2160232885","https://openalex.org/W2162142896","https://openalex.org/W2164069152","https://openalex.org/W2489501352","https://openalex.org/W2537623931","https://openalex.org/W2749561448","https://openalex.org/W2767914218","https://openalex.org/W2886285149","https://openalex.org/W2897805491","https://openalex.org/W2909285912","https://openalex.org/W2980215047","https://openalex.org/W3000124759","https://openalex.org/W3081323488","https://openalex.org/W3088039709","https://openalex.org/W3116963543","https://openalex.org/W4231254854","https://openalex.org/W4360754846","https://openalex.org/W6728998201","https://openalex.org/W6772901784","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2118564381","https://openalex.org/W2163901716","https://openalex.org/W2152204162","https://openalex.org/W2739821120","https://openalex.org/W2150136235","https://openalex.org/W2026095310","https://openalex.org/W2140661912","https://openalex.org/W2056806613","https://openalex.org/W2153069032"],"abstract_inverted_index":{"MOTIVATION:":[0],"A":[1],"common":[2,180],"experimental":[3,118],"output":[4],"in":[5,14,242,253],"biomedical":[6],"science":[7],"is":[8,66,90],"a":[9,15,26,45,48,53,58,76,94,102,139,175,194,214,243,248],"list":[10],"of":[11,28,61,75,82,98,101,126,132,141,152,170,177,182,189,196,239,267,286,295,301,312],"genes":[12],"implicated":[13],"given":[16],"biological":[17],"process":[18],"or":[19,33,47],"disease.":[20],"The":[21,276],"gene":[22,88,153],"lists":[23,89,154],"resulting":[24],"from":[25],"group":[27,140],"studies":[29],"answering":[30],"the":[31,70,73,80,99,130,168,171,179,209,221,237,258,299,305,310],"same,":[32],"similar,":[34],"questions":[35],"can":[36,78,316],"be":[37,113,317],"combined":[38],"by":[39,260],"ranking":[40,54,249],"aggregation":[41,55,172,250],"methods":[42,143,173,296],"to":[43,68,112,117,166,208,246,264,290,308],"find":[44],"consensus":[46],"more":[49],"reliable":[50],"answer.":[51],"Evaluating":[52],"method":[56],"on":[57,87,93,220,298],"specific":[59],"type":[60],"data":[62,119,163,200,219,268,280,331],"before":[63],"using":[64,157,201,216,257,304],"it":[65],"required":[67],"support":[69],"reliability":[71],"since":[72],"property":[74],"dataset":[77],"influence":[79],"performance":[81,169],"an":[83,254,292,313],"algorithm.":[84],"Such":[85],"evaluation":[86,210,241],"usually":[91],"based":[92,297],"simulated":[95,109,158,212,279],"database":[96],"because":[97],"lack":[100],"known":[103],"truth":[104],"for":[105,150,278,324],"real":[106,160,183,217],"data.":[107,161],"However,":[108],"datasets":[110],"tend":[111],"too":[114],"small":[115],"compared":[116,156],"and":[120,129,144,159,193,198,229,252,282],"neglect":[121],"key":[122],"features,":[123],"including":[124],"heterogeneity":[125,188,266],"quality,":[127,190],"relevance":[128],"inclusion":[131],"unranked":[133,197],"lists.":[134],"RESULTS:":[135],"In":[136,206],"this":[137,302],"study,":[138],"existing":[142],"their":[145],"variations":[146],"that":[147],"are":[148,155,332],"suitable":[149],"meta-analysis":[151,259],"Simulated":[162],"were":[164],"used":[165],"explore":[167],"as":[174],"function":[176],"emulating":[178],"scenarios":[181],"genomic":[184,218],"data,":[185,213],"with":[186,211],"various":[187],"noise":[191],"level":[192],"mix":[195],"ranked":[199],"20":[202],"000":[203],"possible":[204],"entities.":[205],"addition":[207],"comparison":[215],"SARS-CoV-2":[222],"virus,":[223],"cancer":[224],"(non-small":[225],"cell":[226],"lung":[227],"cancer)":[228],"bacteria":[230],"(macrophage":[231],"apoptosis)":[232],"was":[233],"performed.":[234],"We":[235],"summarize":[236],"results":[238,300],"our":[240],"simple":[244],"flowchart":[245],"select":[247],"method,":[251],"automated":[255],"implementation":[256],"information":[261],"content":[262],"algorithm":[263,307],"infer":[265,309],"quality":[269],"across":[270],"input":[271,314],"datasets.":[272],"AVAILABILITY":[273],"AND":[274],"IMPLEMENTATION:":[275],"code":[277],"generation":[281],"running":[283,325],"edited":[284],"version":[285],"algorithms:":[287],"https://github.com/baillielab/comparison_of_RA_methods.":[288],"Code":[289],"perform":[291],"optimal":[293],"selection":[294],"review,":[303],"MAIC":[306],"characteristics":[311],"dataset,":[315],"downloaded":[318],"here:":[319],"https://github.com/baillielab/maic.":[320],"An":[321],"online":[322],"service":[323],"MAIC:":[326],"https://baillielab.net/maic.":[327],"SUPPLEMENTARY":[328],"INFORMATION:":[329],"Supplementary":[330],"available":[333],"at":[334],"Bioinformatics":[335],"online.":[336]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2}],"updated_date":"2026-05-24T08:33:08.758527","created_date":"2025-10-10T00:00:00"}
