{"id":"https://openalex.org/W4294667050","doi":"https://doi.org/10.1093/bioinformatics/btac601","title":"Differential RNA methylation analysis for MeRIP-seq data under general experimental design","display_name":"Differential RNA methylation analysis for MeRIP-seq data under general experimental design","publication_year":2022,"publication_date":"2022-09-05","ids":{"openalex":"https://openalex.org/W4294667050","doi":"https://doi.org/10.1093/bioinformatics/btac601","pmid":"https://pubmed.ncbi.nlm.nih.gov/36063045"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac601","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac601","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/20/4705/46535134/btac601.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/20/4705/46535134/btac601.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016883884","display_name":"Zhenxing Guo","orcid":"https://orcid.org/0000-0002-8381-7547"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhenxing Guo","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Emory University , Atlanta, GA 30322, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Emory University , Atlanta, GA 30322, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073110170","display_name":"Andrew M. Shafik","orcid":"https://orcid.org/0000-0002-8460-1553"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew M Shafik","raw_affiliation_strings":["Department of Human Genetics, Emory University , Atlanta, GA 30322, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, Emory University , Atlanta, GA 30322, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039869995","display_name":"Peng Jin","orcid":"https://orcid.org/0000-0001-6137-6659"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peng Jin","raw_affiliation_strings":["Department of Human Genetics, Emory University , Atlanta, GA 30322, USA"],"raw_orcid":"https://orcid.org/0000-0001-6137-6659","affiliations":[{"raw_affiliation_string":"Department of Human Genetics, Emory University , Atlanta, GA 30322, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083170497","display_name":"Hao Wu","orcid":"https://orcid.org/0000-0003-1269-7354"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hao Wu","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Emory University , Atlanta, GA 30322, USA"],"raw_orcid":"https://orcid.org/0000-0003-1269-7354","affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Emory University , Atlanta, GA 30322, USA","institution_ids":["https://openalex.org/I150468666"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5083170497"],"corresponding_institution_ids":["https://openalex.org/I150468666"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.0371,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.87686679,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"38","issue":"20","first_page":"4705","last_page":"4712"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.910099983215332,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.910099983215332,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.026499999687075615,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.018200000748038292,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9419107437133789},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6493780016899109},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5444392561912537},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.5133213400840759},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.5071406364440918},{"id":"https://openalex.org/keywords/negative-binomial-distribution","display_name":"Negative binomial distribution","score":0.4710785448551178},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.44081810116767883},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.4307674169540405},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.41389814019203186},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3308260142803192},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3027762770652771},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.2862318158149719},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2076658010482788},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1940460205078125},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11391770839691162},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.09515038132667542}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9419107437133789},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6493780016899109},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5444392561912537},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.5133213400840759},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.5071406364440918},{"id":"https://openalex.org/C199335787","wikidata":"https://www.wikidata.org/wiki/Q743364","display_name":"Negative binomial distribution","level":3,"score":0.4710785448551178},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.44081810116767883},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.4307674169540405},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.41389814019203186},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3308260142803192},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3027762770652771},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.2862318158149719},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2076658010482788},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1940460205078125},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11391770839691162},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.09515038132667542},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C100906024","wikidata":"https://www.wikidata.org/wiki/Q205692","display_name":"Poisson distribution","level":2,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008745","descriptor_name":"Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008745","descriptor_name":"Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008745","descriptor_name":"Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D047468","descriptor_name":"Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047468","descriptor_name":"Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047468","descriptor_name":"Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac601","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac601","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/20/4705/46535134/btac601.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36063045","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36063045","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9563684","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9563684","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac601","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac601","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/20/4705/46535134/btac601.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1311850278","display_name":null,"funder_award_id":"R01 GM141392","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G1555478539","display_name":null,"funder_award_id":"MH116441","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G1748042762","display_name":null,"funder_award_id":"NS111602","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2863710865","display_name":null,"funder_award_id":"HG008935","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3602054774","display_name":null,"funder_award_id":"GM141392","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4978443175","display_name":null,"funder_award_id":"R01 GM122083","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G5016663966","display_name":null,"funder_award_id":"GM122083","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7789122563","display_name":null,"funder_award_id":"RM1 HG008935","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1804706545","https://openalex.org/W1885924565","https://openalex.org/W2002280328","https://openalex.org/W2016761672","https://openalex.org/W2022770379","https://openalex.org/W2037335353","https://openalex.org/W2046209489","https://openalex.org/W2065847836","https://openalex.org/W2076020654","https://openalex.org/W2083633251","https://openalex.org/W2105966355","https://openalex.org/W2110029042","https://openalex.org/W2110065044","https://openalex.org/W2110583812","https://openalex.org/W2117131162","https://openalex.org/W2122991660","https://openalex.org/W2136428136","https://openalex.org/W2166153887","https://openalex.org/W2171111703","https://openalex.org/W2179438025","https://openalex.org/W2330956224","https://openalex.org/W2335010255","https://openalex.org/W2627064270","https://openalex.org/W2744100769","https://openalex.org/W2752930292","https://openalex.org/W2892832604","https://openalex.org/W2903665452","https://openalex.org/W2910238710","https://openalex.org/W2922969171","https://openalex.org/W2942683196","https://openalex.org/W2952420117","https://openalex.org/W2952723565","https://openalex.org/W2972265392","https://openalex.org/W2992958546","https://openalex.org/W2998099417","https://openalex.org/W2999012956","https://openalex.org/W3006737239","https://openalex.org/W3120956708","https://openalex.org/W3137052700","https://openalex.org/W4285796355"],"related_works":["https://openalex.org/W2135678793","https://openalex.org/W2011682793","https://openalex.org/W2109288169","https://openalex.org/W2157684052","https://openalex.org/W2978247079","https://openalex.org/W2140163842","https://openalex.org/W2148708580","https://openalex.org/W2152239989","https://openalex.org/W4394515721","https://openalex.org/W4394395571"],"abstract_inverted_index":{"MOTIVATION:":[0],"RNA":[1,16,34,49],"epigenetics":[2],"is":[3,141,157,164],"an":[4,160],"emerging":[5],"field":[6],"to":[7,22,84,148],"study":[8],"the":[9,39,59,95],"post-transcriptional":[10],"gene":[11],"regulation.":[12],"The":[13],"dynamics":[14],"of":[15,42,48,61,110],"epigenetic":[17,50],"modification":[18,45],"have":[19],"been":[20],"reported":[21],"associate":[23],"with":[24],"many":[25],"human":[26],"diseases.":[27],"Recently":[28],"developed":[29],"high-throughput":[30],"technology":[31],"named":[32],"Methylated":[33],"Immunoprecipitation":[35],"Sequencing":[36],"(MeRIP-seq)":[37],"enables":[38],"transcriptome-wide":[40],"profiling":[41],"N6-methyladenosine":[43],"(m6A)":[44],"and":[46,112,116,133,145,163],"comparison":[47,60],"modifications.":[51],"There":[52],"are":[53,172],"a":[54,80,100],"few":[55],"computational":[56],"methods":[57],"for":[58,107,120],"mRNA":[62,88],"modifications":[63],"under":[64,124],"different":[65],"conditions":[66],"but":[67],"they":[68],"all":[69],"suffer":[70],"from":[71,90],"serious":[72],"limitations.":[73],"RESULTS:":[74],"In":[75],"this":[76],"work,":[77],"we":[78],"develop":[79],"novel":[81],"statistical":[82,117,122],"method":[83,140,155],"detect":[85],"differentially":[86],"methylated":[87],"regions":[89],"MeRIP-seq":[91],"data.":[92],"We":[93],"model":[94,104],"sequence":[96],"count":[97],"data":[98,135,171],"by":[99],"hierarchical":[101],"negative":[102],"binomial":[103],"that":[105,138],"accounts":[106],"various":[108],"sources":[109],"variations":[111],"derive":[113],"parameter":[114],"estimation":[115],"testing":[118],"procedures":[119],"flexible":[121,146],"inferences":[123],"general":[125],"experimental":[126],"designs.":[127],"Extensive":[128],"benchmark":[129],"evaluations":[130],"in":[131],"simulation":[132],"real":[134],"analyses":[136],"demonstrate":[137],"our":[139],"more":[142],"accurate,":[143],"robust":[144],"compared":[147],"existing":[149],"methods.":[150],"AVAILABILITY":[151],"AND":[152],"IMPLEMENTATION:":[153],"Our":[154],"TRESS":[156],"implemented":[158],"as":[159],"R/Bioconductor":[161],"package":[162],"available":[165,173],"at":[166,174],"https://bioconductor.org/packages/devel/TRESS.":[167],"SUPPLEMENTARY":[168],"INFORMATION:":[169],"Supplementary":[170],"Bioinformatics":[175],"online.":[176]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":4}],"updated_date":"2026-07-16T13:24:37.021932","created_date":"2025-10-10T00:00:00"}
