{"id":"https://openalex.org/W4292961170","doi":"https://doi.org/10.1093/bioinformatics/btac578","title":"Predicting cross-tissue hormone\u2013gene relations using balanced word embeddings","display_name":"Predicting cross-tissue hormone\u2013gene relations using balanced word embeddings","publication_year":2022,"publication_date":"2022-08-24","ids":{"openalex":"https://openalex.org/W4292961170","doi":"https://doi.org/10.1093/bioinformatics/btac578","pmid":"https://pubmed.ncbi.nlm.nih.gov/36000859"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac578","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac578","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bioinformatics/btac578","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016641313","display_name":"Aditya Kailas Jadhav","orcid":"https://orcid.org/0000-0001-6806-1537"},"institutions":[{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Aditya Jadhav","raw_affiliation_strings":["Department of Computer Science and Engineering, Indian Institute of Technology (IIT) Madras , Chennai, India"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Indian Institute of Technology (IIT) Madras , Chennai, India","institution_ids":["https://openalex.org/I24676775"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061190677","display_name":"Tarun Kumar","orcid":"https://orcid.org/0000-0001-6265-629X"},"institutions":[{"id":"https://openalex.org/I4210151956","display_name":"Robert Bosch (India)","ror":"https://ror.org/04my8ty22","country_code":"IN","type":"company","lineage":["https://openalex.org/I4210151956","https://openalex.org/I889804353"]},{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Tarun Kumar","raw_affiliation_strings":["Department of Computer Science and Engineering, Indian Institute of Technology (IIT) Madras , Chennai, India","Initiative for Biological Systems Engineering, IIT Madras , Chennai, India","Robert Bosch Centre for Data Science and Artificial Intelligence, IIT Madras , Chennai, India"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Indian Institute of Technology (IIT) Madras , Chennai, India","institution_ids":["https://openalex.org/I24676775"]},{"raw_affiliation_string":"Initiative for Biological Systems Engineering, IIT Madras , Chennai, India","institution_ids":["https://openalex.org/I24676775"]},{"raw_affiliation_string":"Robert Bosch Centre for Data Science and Artificial Intelligence, IIT Madras , Chennai, India","institution_ids":["https://openalex.org/I4210151956","https://openalex.org/I24676775"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073293722","display_name":"Mohit Raghavendra","orcid":"https://orcid.org/0009-0005-1484-1577"},"institutions":[{"id":"https://openalex.org/I11880225","display_name":"National Institute of Technology Karnataka","ror":"https://ror.org/01hz4v948","country_code":"IN","type":"education","lineage":["https://openalex.org/I11880225"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Mohit Raghavendra","raw_affiliation_strings":["Department of Information Technology, National Institute of Technology Karnataka , Surathkal, India"],"affiliations":[{"raw_affiliation_string":"Department of Information Technology, National Institute of Technology Karnataka , Surathkal, India","institution_ids":["https://openalex.org/I11880225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075701997","display_name":"Tamizhini Loganathan","orcid":"https://orcid.org/0000-0002-7736-7885"},"institutions":[{"id":"https://openalex.org/I4210151956","display_name":"Robert Bosch (India)","ror":"https://ror.org/04my8ty22","country_code":"IN","type":"company","lineage":["https://openalex.org/I4210151956","https://openalex.org/I889804353"]},{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Tamizhini Loganathan","raw_affiliation_strings":["Initiative for Biological Systems Engineering, IIT Madras , Chennai, India","Robert Bosch Centre for Data Science and Artificial Intelligence, IIT Madras , Chennai, India"],"affiliations":[{"raw_affiliation_string":"Initiative for Biological Systems Engineering, IIT Madras , Chennai, India","institution_ids":["https://openalex.org/I24676775"]},{"raw_affiliation_string":"Robert Bosch Centre for Data Science and Artificial Intelligence, IIT Madras , Chennai, India","institution_ids":["https://openalex.org/I4210151956","https://openalex.org/I24676775"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077782872","display_name":"Manikandan Narayanan","orcid":"https://orcid.org/0000-0002-8490-4087"},"institutions":[{"id":"https://openalex.org/I4210151956","display_name":"Robert Bosch (India)","ror":"https://ror.org/04my8ty22","country_code":"IN","type":"company","lineage":["https://openalex.org/I4210151956","https://openalex.org/I889804353"]},{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Manikandan Narayanan","raw_affiliation_strings":["Department of Computer Science and Engineering, Indian Institute of Technology (IIT) Madras , Chennai, India","Initiative for Biological Systems Engineering, IIT Madras , Chennai, India","Robert Bosch Centre for Data Science and Artificial Intelligence, IIT Madras , Chennai, India"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Indian Institute of Technology (IIT) Madras , Chennai, India","institution_ids":["https://openalex.org/I24676775"]},{"raw_affiliation_string":"Initiative for Biological Systems Engineering, IIT Madras , Chennai, India","institution_ids":["https://openalex.org/I24676775"]},{"raw_affiliation_string":"Robert Bosch Centre for Data Science and Artificial Intelligence, IIT Madras , Chennai, India","institution_ids":["https://openalex.org/I4210151956","https://openalex.org/I24676775"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5077782872"],"corresponding_institution_ids":["https://openalex.org/I24676775","https://openalex.org/I4210151956"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7799,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.69182769,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"38","issue":"20","first_page":"4771","last_page":"4781"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.6965407729148865},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5489674806594849},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5292942523956299},{"id":"https://openalex.org/keywords/hormone","display_name":"Hormone","score":0.42716333270072937},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4215327501296997},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.34175047278404236},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3295038342475891},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3089829981327057},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.13522124290466309},{"id":"https://openalex.org/keywords/endocrinology","display_name":"Endocrinology","score":0.11618661880493164},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.05899819731712341}],"concepts":[{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.6965407729148865},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5489674806594849},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5292942523956299},{"id":"https://openalex.org/C71315377","wikidata":"https://www.wikidata.org/wiki/Q11364","display_name":"Hormone","level":2,"score":0.42716333270072937},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4215327501296997},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.34175047278404236},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3295038342475891},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3089829981327057},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.13522124290466309},{"id":"https://openalex.org/C134018914","wikidata":"https://www.wikidata.org/wiki/Q162606","display_name":"Endocrinology","level":1,"score":0.11618661880493164},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.05899819731712341}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006728","descriptor_name":"Hormones","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006728","descriptor_name":"Hormones","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006728","descriptor_name":"Hormones","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006728","descriptor_name":"Hormones","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac578","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac578","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36000859","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36000859","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9563690","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9563690","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac578","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac578","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W1591261915","https://openalex.org/W1979104937","https://openalex.org/W1994410331","https://openalex.org/W2048380327","https://openalex.org/W2052217781","https://openalex.org/W2070050178","https://openalex.org/W2096173332","https://openalex.org/W2103107938","https://openalex.org/W2136437513","https://openalex.org/W2148143831","https://openalex.org/W2149680578","https://openalex.org/W2162018923","https://openalex.org/W2169318796","https://openalex.org/W2493916176","https://openalex.org/W2521200999","https://openalex.org/W2605010067","https://openalex.org/W2612519453","https://openalex.org/W2786693834","https://openalex.org/W2800788706","https://openalex.org/W2808272687","https://openalex.org/W2884165257","https://openalex.org/W2884668708","https://openalex.org/W2901644252","https://openalex.org/W2911489562","https://openalex.org/W2915769855","https://openalex.org/W2929623625","https://openalex.org/W2944289785","https://openalex.org/W2944400536","https://openalex.org/W2947953792","https://openalex.org/W2950342274","https://openalex.org/W2950595506","https://openalex.org/W2969433956","https://openalex.org/W2983166786","https://openalex.org/W2993039085","https://openalex.org/W3004621088","https://openalex.org/W3005405509","https://openalex.org/W3029912146","https://openalex.org/W3099810371","https://openalex.org/W3133859624","https://openalex.org/W3138055079","https://openalex.org/W4213108508","https://openalex.org/W4293713156","https://openalex.org/W4294170691","https://openalex.org/W6682691769"],"related_works":["https://openalex.org/W2409111062","https://openalex.org/W4234308612","https://openalex.org/W1569283511","https://openalex.org/W3190496120","https://openalex.org/W4386772447","https://openalex.org/W1751893878","https://openalex.org/W54712127","https://openalex.org/W308103393","https://openalex.org/W4236193183","https://openalex.org/W2173056374"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":6}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
