{"id":"https://openalex.org/W4292608372","doi":"https://doi.org/10.1093/bioinformatics/btac571","title":"HNOXPred: a web tool for the prediction of gas-sensing H-NOX proteins from amino acid sequence","display_name":"HNOXPred: a web tool for the prediction of gas-sensing H-NOX proteins from amino acid sequence","publication_year":2022,"publication_date":"2022-08-22","ids":{"openalex":"https://openalex.org/W4292608372","doi":"https://doi.org/10.1093/bioinformatics/btac571","pmid":"https://pubmed.ncbi.nlm.nih.gov/35993887"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac571","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/19/4643/46222035/btac571.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/19/4643/46222035/btac571.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085656556","display_name":"Shiyu Jiang","orcid":"https://orcid.org/0000-0001-9450-7379"},"institutions":[{"id":"https://openalex.org/I4210153668","display_name":"Wenzhou-Kean University","ror":"https://ror.org/05609xa16","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153668"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shiyu Jiang","raw_affiliation_strings":["Department of Computer Science, Wenzhou-Kean University , Wenzhou, Zhejiang Province 325060, China"],"raw_orcid":"https://orcid.org/0000-0001-9450-7379","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Wenzhou-Kean University , Wenzhou, Zhejiang Province 325060, China","institution_ids":["https://openalex.org/I4210153668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027414795","display_name":"Hemn Barzan Abdalla","orcid":"https://orcid.org/0000-0002-3637-0447"},"institutions":[{"id":"https://openalex.org/I4210153668","display_name":"Wenzhou-Kean University","ror":"https://ror.org/05609xa16","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153668"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hemn Barzan Abdalla","raw_affiliation_strings":["Department of Computer Science, Wenzhou-Kean University , Wenzhou, Zhejiang Province 325060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Wenzhou-Kean University , Wenzhou, Zhejiang Province 325060, China","institution_ids":["https://openalex.org/I4210153668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042736754","display_name":"Chuyun Bi","orcid":"https://orcid.org/0000-0002-6822-7274"},"institutions":[{"id":"https://openalex.org/I4210115595","display_name":"Wenzhou Municipal Sci-Tech Bureau","ror":"https://ror.org/02fr0s482","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210115595"]},{"id":"https://openalex.org/I4210153668","display_name":"Wenzhou-Kean University","ror":"https://ror.org/05609xa16","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153668"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chuyun Bi","raw_affiliation_strings":["Department of Biology, Wenzhou-Kean University , Wenzhou, Zhejiang Province 325060, China","Wenzhou Municipal Key Lab for Applied Biomedical and Biopharmaceutical Informatics , Wenzhou, Zhejiang Province 325060, China","Zhejiang Bioinformatics International Science and Technology Cooperation Center , Wenzhou, Zhejiang Province 325060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Wenzhou-Kean University , Wenzhou, Zhejiang Province 325060, China","institution_ids":["https://openalex.org/I4210153668"]},{"raw_affiliation_string":"Wenzhou Municipal Key Lab for Applied Biomedical and Biopharmaceutical Informatics , Wenzhou, Zhejiang Province 325060, China","institution_ids":["https://openalex.org/I4210115595"]},{"raw_affiliation_string":"Zhejiang Bioinformatics International Science and Technology Cooperation Center , Wenzhou, Zhejiang Province 325060, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100434308","display_name":"Yi Zhu","orcid":"https://orcid.org/0000-0002-1778-8880"},"institutions":[{"id":"https://openalex.org/I4210153668","display_name":"Wenzhou-Kean University","ror":"https://ror.org/05609xa16","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153668"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Zhu","raw_affiliation_strings":["Department of Biology, Wenzhou-Kean University , Wenzhou, Zhejiang Province 325060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Wenzhou-Kean University , Wenzhou, Zhejiang Province 325060, China","institution_ids":["https://openalex.org/I4210153668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056487339","display_name":"Xuechen Tian","orcid":"https://orcid.org/0000-0002-1256-2890"},"institutions":[{"id":"https://openalex.org/I4210115595","display_name":"Wenzhou Municipal Sci-Tech Bureau","ror":"https://ror.org/02fr0s482","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210115595"]},{"id":"https://openalex.org/I4210153668","display_name":"Wenzhou-Kean University","ror":"https://ror.org/05609xa16","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153668"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuechen Tian","raw_affiliation_strings":["Department of Biology, Wenzhou-Kean University , Wenzhou, Zhejiang Province 325060, China","Wenzhou Municipal Key Lab for Applied Biomedical and Biopharmaceutical Informatics , Wenzhou, Zhejiang Province 325060, China","Zhejiang Bioinformatics International Science and Technology Cooperation Center , Wenzhou, Zhejiang Province 325060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Wenzhou-Kean University , Wenzhou, Zhejiang Province 325060, China","institution_ids":["https://openalex.org/I4210153668"]},{"raw_affiliation_string":"Wenzhou Municipal Key Lab for Applied Biomedical and Biopharmaceutical Informatics , Wenzhou, Zhejiang Province 325060, China","institution_ids":["https://openalex.org/I4210115595"]},{"raw_affiliation_string":"Zhejiang Bioinformatics International Science and Technology Cooperation Center , Wenzhou, Zhejiang Province 325060, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114549772","display_name":"Yixin Yang","orcid":"https://orcid.org/0000-0001-5717-7075"},"institutions":[{"id":"https://openalex.org/I4210115595","display_name":"Wenzhou Municipal Sci-Tech Bureau","ror":"https://ror.org/02fr0s482","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210115595"]},{"id":"https://openalex.org/I4210153668","display_name":"Wenzhou-Kean University","ror":"https://ror.org/05609xa16","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153668"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yixin Yang","raw_affiliation_strings":["Department of Biology, Wenzhou-Kean University , Wenzhou, Zhejiang Province 325060, China","Wenzhou Municipal Key Lab for Applied Biomedical and Biopharmaceutical Informatics , Wenzhou, Zhejiang Province 325060, China","Zhejiang Bioinformatics International Science and Technology Cooperation Center , Wenzhou, Zhejiang Province 325060, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Wenzhou-Kean University , Wenzhou, Zhejiang Province 325060, China","institution_ids":["https://openalex.org/I4210153668"]},{"raw_affiliation_string":"Wenzhou Municipal Key Lab for Applied Biomedical and Biopharmaceutical Informatics , Wenzhou, Zhejiang Province 325060, China","institution_ids":["https://openalex.org/I4210115595"]},{"raw_affiliation_string":"Zhejiang Bioinformatics International Science and Technology Cooperation Center , Wenzhou, Zhejiang Province 325060, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077856443","display_name":"Aloysius Wong","orcid":"https://orcid.org/0000-0002-9105-5845"},"institutions":[{"id":"https://openalex.org/I4210115595","display_name":"Wenzhou Municipal Sci-Tech Bureau","ror":"https://ror.org/02fr0s482","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210115595"]},{"id":"https://openalex.org/I4210153668","display_name":"Wenzhou-Kean University","ror":"https://ror.org/05609xa16","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210153668"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Aloysius Wong","raw_affiliation_strings":["Department of Biology, Wenzhou-Kean University , Wenzhou, Zhejiang Province 325060, China","Wenzhou Municipal Key Lab for Applied Biomedical and Biopharmaceutical Informatics , Wenzhou, Zhejiang Province 325060, China","Zhejiang Bioinformatics International Science and Technology Cooperation Center , Wenzhou, Zhejiang Province 325060, China"],"raw_orcid":"https://orcid.org/0000-0002-9105-5845","affiliations":[{"raw_affiliation_string":"Department of Biology, Wenzhou-Kean University , Wenzhou, Zhejiang Province 325060, China","institution_ids":["https://openalex.org/I4210153668"]},{"raw_affiliation_string":"Wenzhou Municipal Key Lab for Applied Biomedical and Biopharmaceutical Informatics , Wenzhou, Zhejiang Province 325060, China","institution_ids":["https://openalex.org/I4210115595"]},{"raw_affiliation_string":"Zhejiang Bioinformatics International Science and Technology Cooperation Center , Wenzhou, Zhejiang Province 325060, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5077856443","https://openalex.org/A5114549772"],"corresponding_institution_ids":["https://openalex.org/I4210115595","https://openalex.org/I4210153668"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.1141,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.39976548,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"38","issue":"19","first_page":"4643","last_page":"4644"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12094","display_name":"Hemoglobin structure and function","score":0.9739000201225281,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12094","display_name":"Hemoglobin structure and function","score":0.9739000201225281,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10155","display_name":"Nitric Oxide and Endothelin Effects","score":0.008200000040233135,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11848","display_name":"Heme Oxygenase-1 and Carbon Monoxide","score":0.005100000184029341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nox","display_name":"NOx","score":0.8045313358306885},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.6827732920646667},{"id":"https://openalex.org/keywords/heme","display_name":"Heme","score":0.5780162811279297},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.5739524364471436},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5460479259490967},{"id":"https://openalex.org/keywords/hemeprotein","display_name":"Hemeprotein","score":0.5047160387039185},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49083954095840454},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.45476749539375305},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.4361266493797302},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4320669174194336},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3734600245952606},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3321094512939453},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.14798417687416077},{"id":"https://openalex.org/keywords/organic-chemistry","display_name":"Organic chemistry","score":0.11585581302642822},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.07488703727722168}],"concepts":[{"id":"https://openalex.org/C203032635","wikidata":"https://www.wikidata.org/wiki/Q20962970","display_name":"NOx","level":3,"score":0.8045313358306885},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.6827732920646667},{"id":"https://openalex.org/C2776217839","wikidata":"https://www.wikidata.org/wiki/Q189621","display_name":"Heme","level":3,"score":0.5780162811279297},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.5739524364471436},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5460479259490967},{"id":"https://openalex.org/C20705724","wikidata":"https://www.wikidata.org/wiki/Q902628","display_name":"Hemeprotein","level":4,"score":0.5047160387039185},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49083954095840454},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.45476749539375305},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.4361266493797302},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4320669174194336},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3734600245952606},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3321094512939453},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.14798417687416077},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.11585581302642822},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.07488703727722168},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C105923489","wikidata":"https://www.wikidata.org/wiki/Q133235","display_name":"Combustion","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006418","descriptor_name":"Heme","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006418","descriptor_name":"Heme","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006418","descriptor_name":"Heme","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006418","descriptor_name":"Heme","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006418","descriptor_name":"Heme","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006418","descriptor_name":"Heme","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006420","descriptor_name":"Hemeproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006420","descriptor_name":"Hemeproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006420","descriptor_name":"Hemeproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009569","descriptor_name":"Nitric Oxide","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009569","descriptor_name":"Nitric Oxide","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009569","descriptor_name":"Nitric Oxide","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009569","descriptor_name":"Nitric Oxide","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009569","descriptor_name":"Nitric Oxide","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009569","descriptor_name":"Nitric Oxide","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010100","descriptor_name":"Oxygen","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010100","descriptor_name":"Oxygen","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010100","descriptor_name":"Oxygen","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010100","descriptor_name":"Oxygen","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010100","descriptor_name":"Oxygen","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010100","descriptor_name":"Oxygen","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019255","descriptor_name":"NADPH Oxidases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019255","descriptor_name":"NADPH Oxidases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019255","descriptor_name":"NADPH Oxidases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btac571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac571","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/19/4643/46222035/btac571.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35993887","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35993887","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac571","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/19/4643/46222035/btac571.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3211531224","display_name":null,"funder_award_id":"32100581","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4292608372.pdf","grobid_xml":"https://content.openalex.org/works/W4292608372.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W2078149894","https://openalex.org/W2124921774","https://openalex.org/W2168101142","https://openalex.org/W2339030728","https://openalex.org/W2790864980","https://openalex.org/W2964283527","https://openalex.org/W2972797625","https://openalex.org/W2978935676","https://openalex.org/W3013501796","https://openalex.org/W3107552003","https://openalex.org/W3147159195","https://openalex.org/W3154217856"],"related_works":["https://openalex.org/W2161928213","https://openalex.org/W1980347870","https://openalex.org/W2081623409","https://openalex.org/W2216269996","https://openalex.org/W2169490506","https://openalex.org/W2139016048","https://openalex.org/W2053445543","https://openalex.org/W2952673796","https://openalex.org/W2000790287","https://openalex.org/W2046928894"],"abstract_inverted_index":{"SUMMARY:":[0],"HNOXPred":[1,68,166],"is":[2,69,153,168],"a":[3,54],"webserver":[4],"for":[5],"the":[6,39,44,66,75,97,104,112,117,125,156],"prediction":[7],"of":[8,47,77,100,150],"gas-sensing":[9,21,33],"heme-nitric":[10],"oxide/oxygen":[11],"(H-NOX)":[12],"proteins":[13,19,36],"from":[14,28,88,135],"amino":[15,41,101,114,122],"acid":[16,123],"sequence.":[17],"H-NOX":[18,48,62,79,108],"are":[20,141,176],"hemoproteins":[22],"found":[23],"in":[24,65,94,107,109],"diverse":[25],"organisms":[26],"ranging":[27],"bacteria":[29],"to":[30,71,90,111,137],"eukaryotes.":[31],"Recently,":[32],"complex":[34],"multi-functional":[35],"containing":[37],"only":[38],"conserved":[40,113],"acids":[42,102,115],"at":[43,170,178],"heme":[45,105],"centers":[46,80],"proteins,":[49],"have":[50],"been":[51],"identified":[52],"through":[53],"motif-based":[55],"approach.":[56],"Based":[57],"on":[58],"experimental":[59],"data":[60,175],"and":[61,73,130,146],"candidates":[63],"reported":[64],"literature,":[67],"created":[70],"automate":[72],"facilitate":[74],"identification":[76],"similar":[78],"across":[81],"systems.":[82],"The":[83,148,165],"server":[84,126,152,167],"features":[85],"HNOXSCORES":[86,133],"scaled":[87],"0":[89],"1":[91],"that":[92],"consider":[93],"its":[95],"calculation,":[96],"physicochemical":[98],"properties":[99],"constituting":[103],"center":[106],"addition":[110],"within":[116],"center.":[118],"From":[119],"user":[120],"input":[121],"sequence,":[124],"returns":[127],"positive":[128],"hits":[129],"their":[131],"calculated":[132],"ordered":[134],"high":[136],"low":[138],"confidence":[139],"which":[140],"accompanied":[142],"by":[143],"interpretation":[144],"guides":[145],"recommendations.":[147],"utility":[149],"this":[151],"demonstrated":[154],"using":[155],"human":[157],"proteome":[158],"as":[159],"an":[160],"example.":[161],"AVAILABILITY":[162],"AND":[163],"IMPLEMENTATION:":[164],"available":[169,177],"https://www.hnoxpred.com.":[171],"SUPPLEMENTARY":[172],"INFORMATION:":[173],"Supplementary":[174],"Bioinformatics":[179],"online.":[180]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
