{"id":"https://openalex.org/W4293567165","doi":"https://doi.org/10.1093/bioinformatics/btac567","title":"SEMgraph: an R package for causal network inference of high-throughput data with structural equation models","display_name":"SEMgraph: an R package for causal network inference of high-throughput data with structural equation models","publication_year":2022,"publication_date":"2022-08-29","ids":{"openalex":"https://openalex.org/W4293567165","doi":"https://doi.org/10.1093/bioinformatics/btac567","pmid":"https://pubmed.ncbi.nlm.nih.gov/36040154"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac567","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac567","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/20/4829/46535037/btac567.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/20/4829/46535037/btac567.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5052156750","display_name":"Mario Grassi","orcid":"https://orcid.org/0000-0001-6612-8566"},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Mario Grassi","raw_affiliation_strings":["Department of Brain and Behavioral Sciences, University of Pavia , Pavia 27100, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Brain and Behavioral Sciences, University of Pavia , Pavia 27100, Italy","institution_ids":["https://openalex.org/I25217355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053517115","display_name":"Fernando Palluzzi","orcid":"https://orcid.org/0000-0003-0861-5512"},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Fernando Palluzzi","raw_affiliation_strings":["Department of Brain and Behavioral Sciences, University of Pavia , Pavia 27100, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Brain and Behavioral Sciences, University of Pavia , Pavia 27100, Italy","institution_ids":["https://openalex.org/I25217355"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059863311","display_name":"Barbara Tarantino","orcid":"https://orcid.org/0000-0001-6384-2561"},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Barbara Tarantino","raw_affiliation_strings":["Department of Brain and Behavioral Sciences, University of Pavia , Pavia 27100, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Brain and Behavioral Sciences, University of Pavia , Pavia 27100, Italy","institution_ids":["https://openalex.org/I25217355"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5059863311"],"corresponding_institution_ids":["https://openalex.org/I25217355"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.563,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.82985187,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"38","issue":"20","first_page":"4829","last_page":"4830"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13283","display_name":"Mental Health Research Topics","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/3205","display_name":"Experimental and Cognitive Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.767331600189209},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6550817489624023},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6146675944328308},{"id":"https://openalex.org/keywords/causal-inference","display_name":"Causal inference","score":0.5750886797904968},{"id":"https://openalex.org/keywords/structural-equation-modeling","display_name":"Structural equation modeling","score":0.5432953834533691},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5081024169921875},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.49413564801216125},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.48043274879455566},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4712132513523102},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4363982677459717},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36495283246040344},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3304401636123657},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28895556926727295},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1782851219177246},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1546265184879303},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14814430475234985},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.10880059003829956},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08817818760871887},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0854400098323822}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.767331600189209},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6550817489624023},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6146675944328308},{"id":"https://openalex.org/C158600405","wikidata":"https://www.wikidata.org/wiki/Q5054566","display_name":"Causal inference","level":2,"score":0.5750886797904968},{"id":"https://openalex.org/C71104824","wikidata":"https://www.wikidata.org/wiki/Q1476639","display_name":"Structural equation modeling","level":2,"score":0.5432953834533691},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5081024169921875},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.49413564801216125},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.48043274879455566},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4712132513523102},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4363982677459717},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36495283246040344},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3304401636123657},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28895556926727295},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1782851219177246},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1546265184879303},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14814430475234985},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.10880059003829956},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08817818760871887},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0854400098323822},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015984","descriptor_name":"Causality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015984","descriptor_name":"Causality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015984","descriptor_name":"Causality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac567","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac567","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/20/4829/46535037/btac567.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36040154","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36040154","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:2103.08332","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2103.08332","pdf_url":"https://arxiv.org/pdf/2103.08332","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac567","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac567","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/20/4829/46535037/btac567.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322874","display_name":"Universit\u00e0 degli Studi di Pavia","ror":"https://ror.org/00s6t1f81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4293567165.pdf","grobid_xml":"https://content.openalex.org/works/W4293567165.grobid-xml"},"referenced_works_count":69,"referenced_works":["https://openalex.org/W52354453","https://openalex.org/W229097380","https://openalex.org/W395020372","https://openalex.org/W1524313545","https://openalex.org/W1567728150","https://openalex.org/W1627191216","https://openalex.org/W1659336119","https://openalex.org/W1913957972","https://openalex.org/W1971962952","https://openalex.org/W1975290397","https://openalex.org/W1979312837","https://openalex.org/W1982754045","https://openalex.org/W1990512452","https://openalex.org/W1997093112","https://openalex.org/W2030630447","https://openalex.org/W2032036108","https://openalex.org/W2033782424","https://openalex.org/W2052975913","https://openalex.org/W2053637013","https://openalex.org/W2054717478","https://openalex.org/W2055234679","https://openalex.org/W2056434135","https://openalex.org/W2062533676","https://openalex.org/W2068535610","https://openalex.org/W2069916798","https://openalex.org/W2071666535","https://openalex.org/W2095293504","https://openalex.org/W2098405376","https://openalex.org/W2101971030","https://openalex.org/W2124068344","https://openalex.org/W2127724926","https://openalex.org/W2131060185","https://openalex.org/W2134469465","https://openalex.org/W2142635246","https://openalex.org/W2143891888","https://openalex.org/W2330978860","https://openalex.org/W2336766371","https://openalex.org/W2469303853","https://openalex.org/W2576536258","https://openalex.org/W2582743722","https://openalex.org/W2595699020","https://openalex.org/W2618817116","https://openalex.org/W2763097300","https://openalex.org/W2831193409","https://openalex.org/W2900569176","https://openalex.org/W2910111050","https://openalex.org/W2937611850","https://openalex.org/W2963172762","https://openalex.org/W2964129930","https://openalex.org/W2964299673","https://openalex.org/W2984870382","https://openalex.org/W2998119497","https://openalex.org/W3006529488","https://openalex.org/W3011726037","https://openalex.org/W3020482790","https://openalex.org/W3022326557","https://openalex.org/W3095325126","https://openalex.org/W3098606038","https://openalex.org/W3098681289","https://openalex.org/W3145915828","https://openalex.org/W4231254854","https://openalex.org/W4247236552","https://openalex.org/W4294216483","https://openalex.org/W4294541781","https://openalex.org/W4298091299","https://openalex.org/W4302423442","https://openalex.org/W4399550058","https://openalex.org/W4399649727","https://openalex.org/W6773269165"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W4385510321","https://openalex.org/W15348386","https://openalex.org/W2314128295","https://openalex.org/W3088642716","https://openalex.org/W1509942269","https://openalex.org/W4287026692","https://openalex.org/W2077895977","https://openalex.org/W2587303152"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
