{"id":"https://openalex.org/W4292178604","doi":"https://doi.org/10.1093/bioinformatics/btac557","title":"Metagenomic binning with assembly graph embeddings","display_name":"Metagenomic binning with assembly graph embeddings","publication_year":2022,"publication_date":"2022-08-16","ids":{"openalex":"https://openalex.org/W4292178604","doi":"https://doi.org/10.1093/bioinformatics/btac557","pmid":"https://pubmed.ncbi.nlm.nih.gov/35972375"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac557","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac557","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/19/4481/46221655/btac557.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/19/4481/46221655/btac557.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024583659","display_name":"Andr\u00e9 Lam\u00farias","orcid":null},"institutions":[{"id":"https://openalex.org/I891191580","display_name":"Aalborg University","ror":"https://ror.org/04m5j1k67","country_code":"DK","type":"education","lineage":["https://openalex.org/I891191580"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Andre Lamurias","raw_affiliation_strings":["Department of Computer Science, Aalborg University , 9000 Aalborg, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Aalborg University , 9000 Aalborg, Denmark","institution_ids":["https://openalex.org/I891191580"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065252382","display_name":"Mantas Sereika","orcid":"https://orcid.org/0000-0001-7568-1080"},"institutions":[{"id":"https://openalex.org/I891191580","display_name":"Aalborg University","ror":"https://ror.org/04m5j1k67","country_code":"DK","type":"education","lineage":["https://openalex.org/I891191580"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Mantas Sereika","raw_affiliation_strings":["Center for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University , 9000 Aalborg, Denmark"],"affiliations":[{"raw_affiliation_string":"Center for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University , 9000 Aalborg, Denmark","institution_ids":["https://openalex.org/I891191580"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049393683","display_name":"Mads Albertsen","orcid":"https://orcid.org/0000-0002-6151-190X"},"institutions":[{"id":"https://openalex.org/I891191580","display_name":"Aalborg University","ror":"https://ror.org/04m5j1k67","country_code":"DK","type":"education","lineage":["https://openalex.org/I891191580"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Mads Albertsen","raw_affiliation_strings":["Center for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University , 9000 Aalborg, Denmark"],"affiliations":[{"raw_affiliation_string":"Center for Microbial Communities, Department of Chemistry and Bioscience, Aalborg University , 9000 Aalborg, Denmark","institution_ids":["https://openalex.org/I891191580"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015313855","display_name":"Katja Hose","orcid":"https://orcid.org/0000-0001-7025-8099"},"institutions":[{"id":"https://openalex.org/I891191580","display_name":"Aalborg University","ror":"https://ror.org/04m5j1k67","country_code":"DK","type":"education","lineage":["https://openalex.org/I891191580"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Katja Hose","raw_affiliation_strings":["Department of Computer Science, Aalborg University , 9000 Aalborg, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Aalborg University , 9000 Aalborg, Denmark","institution_ids":["https://openalex.org/I891191580"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080416900","display_name":"Thomas D. Nielsen","orcid":"https://orcid.org/0000-0002-4823-6341"},"institutions":[{"id":"https://openalex.org/I891191580","display_name":"Aalborg University","ror":"https://ror.org/04m5j1k67","country_code":"DK","type":"education","lineage":["https://openalex.org/I891191580"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Thomas Dyhre Nielsen","raw_affiliation_strings":["Department of Computer Science, Aalborg University , 9000 Aalborg, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Aalborg University , 9000 Aalborg, Denmark","institution_ids":["https://openalex.org/I891191580"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5024583659"],"corresponding_institution_ids":["https://openalex.org/I891191580"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.9787,"has_fulltext":true,"cited_by_count":65,"citation_normalized_percentile":{"value":0.97560236,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"38","issue":"19","first_page":"4481","last_page":"4487"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8861045837402344},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6290718913078308},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5874793529510498},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.435280442237854},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3654000759124756},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3055846095085144},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28101950883865356},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.24549847841262817},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.143959641456604},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0711258053779602}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8861045837402344},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6290718913078308},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5874793529510498},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.435280442237854},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3654000759124756},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3055846095085144},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28101950883865356},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.24549847841262817},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.143959641456604},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0711258053779602}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btac557","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac557","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/19/4481/46221655/btac557.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35972375","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35972375","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:publications/18381807-5ebf-49a1-b2e3-90d6d6869475","is_oa":true,"landing_page_url":"https://vbn.aau.dk/da/publications/18381807-5ebf-49a1-b2e3-90d6d6869475","pdf_url":"https://vbn.aau.dk/ws/files/489314849/btac557.pdf","source":{"id":"https://openalex.org/S4306401731","display_name":"VBN Forskningsportal (Aalborg Universitet)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I891191580","host_organization_name":"Aalborg University","host_organization_lineage":["https://openalex.org/I891191580"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Lamurias, A, Sereika, M, Albertsen, M, Hose, K & Nielsen, T D 2022, 'Metagenomic binning with assembly graph embeddings', Bioinformatics, vol. 38, no. 19, pp. 4481-4487. https://doi.org/10.1093/bioinformatics/btac557","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:9525014","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9525014","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac557","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac557","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/19/4481/46221655/btac557.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5699999928474426,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G1436374684","display_name":null,"funder_award_id":"15510","funder_id":"https://openalex.org/F4320310490","funder_display_name":"Villum Fonden"},{"id":"https://openalex.org/G5339259608","display_name":null,"funder_award_id":"34299","funder_id":"https://openalex.org/F4320310490","funder_display_name":"Villum Fonden"}],"funders":[{"id":"https://openalex.org/F4320310490","display_name":"Villum Fonden","ror":"https://ror.org/007ww2d15"},{"id":"https://openalex.org/F4320330079","display_name":"Poul Due Jensens Fond","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4292178604.pdf","grobid_xml":"https://content.openalex.org/works/W4292178604.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1878521557","https://openalex.org/W1976608804","https://openalex.org/W2012251902","https://openalex.org/W2089859322","https://openalex.org/W2103901746","https://openalex.org/W2112364185","https://openalex.org/W2121291798","https://openalex.org/W2124637227","https://openalex.org/W2141202455","https://openalex.org/W2145537580","https://openalex.org/W2337508844","https://openalex.org/W2341364667","https://openalex.org/W2736920791","https://openalex.org/W2748160029","https://openalex.org/W2748498982","https://openalex.org/W2797413896","https://openalex.org/W2810538097","https://openalex.org/W2929062889","https://openalex.org/W2938868597","https://openalex.org/W2950513687","https://openalex.org/W2950785362","https://openalex.org/W2980624067","https://openalex.org/W3011335316","https://openalex.org/W3043405618","https://openalex.org/W3046109898","https://openalex.org/W3091506611","https://openalex.org/W3120084484","https://openalex.org/W3141597806","https://openalex.org/W3186559574","https://openalex.org/W3205855923","https://openalex.org/W3209109374","https://openalex.org/W3217463608","https://openalex.org/W4226033686","https://openalex.org/W4283809266","https://openalex.org/W4286263931"],"related_works":["https://openalex.org/W2210738511","https://openalex.org/W2487541429","https://openalex.org/W1910109602","https://openalex.org/W2080583581","https://openalex.org/W4297131566","https://openalex.org/W2017364432","https://openalex.org/W2329606903","https://openalex.org/W3195915274","https://openalex.org/W4285082713","https://openalex.org/W2344981695"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":21},{"year":2024,"cited_by_count":25},{"year":2023,"cited_by_count":11}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}