{"id":"https://openalex.org/W4291237382","doi":"https://doi.org/10.1093/bioinformatics/btac551","title":"Deep Local Analysis evaluates protein docking conformations with locally oriented cubes","display_name":"Deep Local Analysis evaluates protein docking conformations with locally oriented cubes","publication_year":2022,"publication_date":"2022-08-13","ids":{"openalex":"https://openalex.org/W4291237382","doi":"https://doi.org/10.1093/bioinformatics/btac551","pmid":"https://pubmed.ncbi.nlm.nih.gov/35962985"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac551","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac551","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btac551/45477464/btac551.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btac551/45477464/btac551.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033790820","display_name":"Yasser Mohseni Behbahani","orcid":"https://orcid.org/0000-0003-0254-6595"},"institutions":[{"id":"https://openalex.org/I4210097156","display_name":"Laboratoire de Biologie Computationnelle et Quantitative","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Yasser Mohseni Behbahani","raw_affiliation_strings":["Sorbonne Universit\u00e9, CNRS, IBPS, Laboratory of Computational and Quantitative Biology (LCQB), UMR 7238 , Paris 75005, France"],"affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, IBPS, Laboratory of Computational and Quantitative Biology (LCQB), UMR 7238 , Paris 75005, France","institution_ids":["https://openalex.org/I4210097156","https://openalex.org/I39804081","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054758673","display_name":"Simon Crouzet","orcid":"https://orcid.org/0000-0002-5012-4621"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210097156","display_name":"Laboratoire de Biologie Computationnelle et Quantitative","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Simon Crouzet","raw_affiliation_strings":["Sorbonne Universit\u00e9, CNRS, IBPS, Laboratory of Computational and Quantitative Biology (LCQB), UMR 7238 , Paris 75005, France"],"affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, IBPS, Laboratory of Computational and Quantitative Biology (LCQB), UMR 7238 , Paris 75005, France","institution_ids":["https://openalex.org/I4210097156","https://openalex.org/I39804081","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076453514","display_name":"\u00c9lodie Laine","orcid":"https://orcid.org/0000-0003-4870-6304"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210097156","display_name":"Laboratoire de Biologie Computationnelle et Quantitative","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Elodie Laine","raw_affiliation_strings":["Sorbonne Universit\u00e9, CNRS, IBPS, Laboratory of Computational and Quantitative Biology (LCQB), UMR 7238 , Paris 75005, France"],"affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, IBPS, Laboratory of Computational and Quantitative Biology (LCQB), UMR 7238 , Paris 75005, France","institution_ids":["https://openalex.org/I4210097156","https://openalex.org/I39804081","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038174177","display_name":"Alessandra Carbone","orcid":"https://orcid.org/0000-0003-2098-5743"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210097156","display_name":"Laboratoire de Biologie Computationnelle et Quantitative","ror":"https://ror.org/00pcqj134","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210097156"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alessandra Carbone","raw_affiliation_strings":["Sorbonne Universit\u00e9, CNRS, IBPS, Laboratory of Computational and Quantitative Biology (LCQB), UMR 7238 , Paris 75005, France"],"affiliations":[{"raw_affiliation_string":"Sorbonne Universit\u00e9, CNRS, IBPS, Laboratory of Computational and Quantitative Biology (LCQB), UMR 7238 , Paris 75005, France","institution_ids":["https://openalex.org/I4210097156","https://openalex.org/I39804081","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5033790820"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210097156"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":2921,"currency":"EUR","value_usd":3150},"fwci":1.563,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.82441166,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"38","issue":"19","first_page":"4505","last_page":"4512"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6688956618309021},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.6420084238052368},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5675499439239502},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43135350942611694},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4273694157600403},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4270777106285095},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.24703341722488403},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18902060389518738},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11501723527908325}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6688956618309021},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.6420084238052368},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5675499439239502},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43135350942611694},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4273694157600403},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4270777106285095},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.24703341722488403},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18902060389518738},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11501723527908325},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btac551","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac551","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btac551/45477464/btac551.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35962985","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35962985","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-03906697v1","is_oa":true,"landing_page_url":"https://hal.sorbonne-universite.fr/hal-03906697","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2022, 38 (19), pp.4505-4512. &#x27E8;10.1093/bioinformatics/btac551&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:HAL:hal-03911370v1","is_oa":false,"landing_page_url":"https://hal.science/hal-03911370","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9525006","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9525006","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac551","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac551","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btac551/45477464/btac551.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.7200000286102295,"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4291237382.pdf","grobid_xml":"https://content.openalex.org/works/W4291237382.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1030883578","https://openalex.org/W1985481261","https://openalex.org/W2014744153","https://openalex.org/W2016333765","https://openalex.org/W2018410079","https://openalex.org/W2062858001","https://openalex.org/W2073911195","https://openalex.org/W2074719974","https://openalex.org/W2086224494","https://openalex.org/W2102245393","https://openalex.org/W2124981562","https://openalex.org/W2130479394","https://openalex.org/W2153983456","https://openalex.org/W2171778773","https://openalex.org/W2208315969","https://openalex.org/W2554109484","https://openalex.org/W2554616080","https://openalex.org/W2559149509","https://openalex.org/W2565027487","https://openalex.org/W2572080171","https://openalex.org/W2750875483","https://openalex.org/W2757172890","https://openalex.org/W2762070994","https://openalex.org/W2794196048","https://openalex.org/W2804521888","https://openalex.org/W2950917157","https://openalex.org/W2951690294","https://openalex.org/W2951841761","https://openalex.org/W2971780522","https://openalex.org/W2990138404","https://openalex.org/W2990689232","https://openalex.org/W2996782940","https://openalex.org/W2996827397","https://openalex.org/W3004070424","https://openalex.org/W3010627576","https://openalex.org/W3110563343","https://openalex.org/W3164107346","https://openalex.org/W3177828909","https://openalex.org/W3186179742","https://openalex.org/W3212912034","https://openalex.org/W3216616254","https://openalex.org/W4220824576","https://openalex.org/W4225378695","https://openalex.org/W4281790889","https://openalex.org/W4309862248"],"related_works":["https://openalex.org/W2731899572","https://openalex.org/W3215138031","https://openalex.org/W3009238340","https://openalex.org/W4321369474","https://openalex.org/W4360585206","https://openalex.org/W4285208911","https://openalex.org/W3082895349","https://openalex.org/W4213079790","https://openalex.org/W2248239756","https://openalex.org/W4323565446"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":7}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
