{"id":"https://openalex.org/W4287447570","doi":"https://doi.org/10.1093/bioinformatics/btac521","title":"Mocafe: a comprehensive Python library for simulating cancer development with Phase Field Models","display_name":"Mocafe: a comprehensive Python library for simulating cancer development with Phase Field Models","publication_year":2022,"publication_date":"2022-07-25","ids":{"openalex":"https://openalex.org/W4287447570","doi":"https://doi.org/10.1093/bioinformatics/btac521","pmid":"https://pubmed.ncbi.nlm.nih.gov/35876789"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac521","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac521","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btac521/6649691","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000077582","display_name":"Franco Pradelli","orcid":"https://orcid.org/0000-0002-7152-5512"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Franco Pradelli","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padova , 35121 Padova, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padova , 35121 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046118465","display_name":"Giovanni Minervini","orcid":"https://orcid.org/0000-0001-7013-5785"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giovanni Minervini","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padova , 35121 Padova, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padova , 35121 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066560665","display_name":"Silvio C. E. Tosatto","orcid":"https://orcid.org/0000-0003-4525-7793"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Silvio C E Tosatto","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padova , 35121 Padova, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padova , 35121 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5066560665"],"corresponding_institution_ids":["https://openalex.org/I138689650"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5411,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.58703232,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"38","issue":"18","first_page":"4440","last_page":"4441"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11087","display_name":"Solidification and crystal growth phenomena","score":0.9675999879837036,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10492","display_name":"Microtubule and mitosis dynamics","score":0.9379000067710876,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8962975740432739},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7564735412597656},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.6169714331626892},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6160356998443604},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5644032955169678},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.5206838846206665},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.44582194089889526},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.4164165258407593},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3391275107860565},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13493433594703674}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8962975740432739},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7564735412597656},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.6169714331626892},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6160356998443604},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5644032955169678},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.5206838846206665},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.44582194089889526},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.4164165258407593},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3391275107860565},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13493433594703674}],"mesh":[{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004282","descriptor_name":"Documentation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007990","descriptor_name":"Libraries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007990","descriptor_name":"Libraries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007990","descriptor_name":"Libraries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac521","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac521","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35876789","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35876789","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:www.research.unipd.it:11577/3461277","is_oa":true,"landing_page_url":"https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btac521/6649691","pdf_url":null,"source":{"id":"https://openalex.org/S4377196283","display_name":"Research Padua  Archive (University of Padua)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:www.research.unipd.it:11577/3461277","is_oa":true,"landing_page_url":"https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btac521/6649691","pdf_url":null,"source":{"id":"https://openalex.org/S4377196283","display_name":"Research Padua  Archive (University of Padua)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5811245815","display_name":null,"funder_award_id":"ID 23825","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"},{"id":"https://openalex.org/G6065546726","display_name":null,"funder_award_id":"IG 2019","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"}],"funders":[{"id":"https://openalex.org/F4320323054","display_name":"Associazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1927559327","https://openalex.org/W1967189731","https://openalex.org/W2039097069","https://openalex.org/W2086011407","https://openalex.org/W2107979247","https://openalex.org/W2111564493","https://openalex.org/W2212370034","https://openalex.org/W2284378488","https://openalex.org/W2556731147","https://openalex.org/W2805953717","https://openalex.org/W2908267105","https://openalex.org/W2980572289","https://openalex.org/W3091361893","https://openalex.org/W3098826600"],"related_works":["https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W4287027380","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W2944823289","https://openalex.org/W4214505573","https://openalex.org/W2789551765","https://openalex.org/W2367815957"],"abstract_inverted_index":{"Mocafe":[0],"is":[1,42],"a":[2,8],"Python":[3],"package":[4],"based":[5],"on":[6,26,34],"FEniCS,":[7],"popular":[9],"computing":[10],"platform":[11],"for":[12],"solving":[13],"partial":[14],"differential":[15],"equations.":[16],"The":[17],"source":[18],"code,":[19],"extensive":[20],"documentation":[21],"and":[22],"demos":[23],"are":[24],"provided":[25],"GitHub":[27],"at":[28,44],"URL:":[29],"https://github.com/BioComputingUP/mocafe.":[30],"Moreover,":[31],"we":[32],"uploaded":[33],"Zenodo":[35],"an":[36],"archive":[37],"of":[38],"the":[39],"package,":[40],"which":[41],"available":[43],"https://doi.org/10.5281/zenodo.6366052.":[45]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
