{"id":"https://openalex.org/W4286001398","doi":"https://doi.org/10.1093/bioinformatics/btac511","title":"<i>ANISE</i>: an application to design mechanobiology simulations of planar epithelia","display_name":"<i>ANISE</i>: an application to design mechanobiology simulations of planar epithelia","publication_year":2022,"publication_date":"2022-07-20","ids":{"openalex":"https://openalex.org/W4286001398","doi":"https://doi.org/10.1093/bioinformatics/btac511","pmid":"https://pubmed.ncbi.nlm.nih.gov/35856714"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac511","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac511","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020216871","display_name":"\u00c1ngel Rodr\u00edguez Cerro","orcid":null},"institutions":[{"id":"https://openalex.org/I2801097182","display_name":"Parc Cient\u00edfic de la Universitat de Val\u00e8ncia","ror":"https://ror.org/04rb60x98","country_code":"ES","type":"education","lineage":["https://openalex.org/I2801097182"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"\u00c1ngel Rodr\u00edguez Cerro","raw_affiliation_strings":["Instituto de Rob\u00f3tica y de Tecnolog\u00edas de la Informaci\u00f3n y la Comunicaci\u00f3n (IRTIC), Universitat de Val\u00e8ncia, C/Catedr\u00e1tico Jos\u00e9 Beltr\u00e1n , 2 46980 Paterna (Valencia), Spain"],"affiliations":[{"raw_affiliation_string":"Instituto de Rob\u00f3tica y de Tecnolog\u00edas de la Informaci\u00f3n y la Comunicaci\u00f3n (IRTIC), Universitat de Val\u00e8ncia, C/Catedr\u00e1tico Jos\u00e9 Beltr\u00e1n , 2 46980 Paterna (Valencia), Spain","institution_ids":["https://openalex.org/I2801097182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054252170","display_name":"Sergio Sancho","orcid":"https://orcid.org/0000-0003-3343-1053"},"institutions":[{"id":"https://openalex.org/I2801097182","display_name":"Parc Cient\u00edfic de la Universitat de Val\u00e8ncia","ror":"https://ror.org/04rb60x98","country_code":"ES","type":"education","lineage":["https://openalex.org/I2801097182"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Sergio Sancho","raw_affiliation_strings":["Instituto de Rob\u00f3tica y de Tecnolog\u00edas de la Informaci\u00f3n y la Comunicaci\u00f3n (IRTIC), Universitat de Val\u00e8ncia, C/Catedr\u00e1tico Jos\u00e9 Beltr\u00e1n , 2 46980 Paterna (Valencia), Spain"],"affiliations":[{"raw_affiliation_string":"Instituto de Rob\u00f3tica y de Tecnolog\u00edas de la Informaci\u00f3n y la Comunicaci\u00f3n (IRTIC), Universitat de Val\u00e8ncia, C/Catedr\u00e1tico Jos\u00e9 Beltr\u00e1n , 2 46980 Paterna (Valencia), Spain","institution_ids":["https://openalex.org/I2801097182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021716469","display_name":"Miriam Liset Prede Rodr\u00edguez","orcid":"https://orcid.org/0000-0001-7618-9522"},"institutions":[{"id":"https://openalex.org/I2801097182","display_name":"Parc Cient\u00edfic de la Universitat de Val\u00e8ncia","ror":"https://ror.org/04rb60x98","country_code":"ES","type":"education","lineage":["https://openalex.org/I2801097182"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"M\u00edriam Rodr\u00edguez","raw_affiliation_strings":["Instituto de Rob\u00f3tica y de Tecnolog\u00edas de la Informaci\u00f3n y la Comunicaci\u00f3n (IRTIC), Universitat de Val\u00e8ncia, C/Catedr\u00e1tico Jos\u00e9 Beltr\u00e1n , 2 46980 Paterna (Valencia), Spain"],"affiliations":[{"raw_affiliation_string":"Instituto de Rob\u00f3tica y de Tecnolog\u00edas de la Informaci\u00f3n y la Comunicaci\u00f3n (IRTIC), Universitat de Val\u00e8ncia, C/Catedr\u00e1tico Jos\u00e9 Beltr\u00e1n , 2 46980 Paterna (Valencia), Spain","institution_ids":["https://openalex.org/I2801097182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023595824","display_name":"Miguel A Gam\u00f3n","orcid":null},"institutions":[{"id":"https://openalex.org/I2801097182","display_name":"Parc Cient\u00edfic de la Universitat de Val\u00e8ncia","ror":"https://ror.org/04rb60x98","country_code":"ES","type":"education","lineage":["https://openalex.org/I2801097182"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel A Gam\u00f3n","raw_affiliation_strings":["Instituto de Rob\u00f3tica y de Tecnolog\u00edas de la Informaci\u00f3n y la Comunicaci\u00f3n (IRTIC), Universitat de Val\u00e8ncia, C/Catedr\u00e1tico Jos\u00e9 Beltr\u00e1n , 2 46980 Paterna (Valencia), Spain"],"affiliations":[{"raw_affiliation_string":"Instituto de Rob\u00f3tica y de Tecnolog\u00edas de la Informaci\u00f3n y la Comunicaci\u00f3n (IRTIC), Universitat de Val\u00e8ncia, C/Catedr\u00e1tico Jos\u00e9 Beltr\u00e1n , 2 46980 Paterna (Valencia), Spain","institution_ids":["https://openalex.org/I2801097182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069016124","display_name":"L\u00e9na Guitou","orcid":"https://orcid.org/0000-0002-4952-5487"},"institutions":[{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"L\u00e9na Guitou","raw_affiliation_strings":["Institute for Integrative Systems Biology (I2SysBio), CSIC-UV, C/Catedr\u00e1tico Agust\u00edn Escardino Benlloch , 9 46980 Paterna (Valencia), Spain"],"affiliations":[{"raw_affiliation_string":"Institute for Integrative Systems Biology (I2SysBio), CSIC-UV, C/Catedr\u00e1tico Agust\u00edn Escardino Benlloch , 9 46980 Paterna (Valencia), Spain","institution_ids":["https://openalex.org/I4210152685"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090302343","display_name":"Rafael J Mart\u00ednez","orcid":null},"institutions":[{"id":"https://openalex.org/I2801097182","display_name":"Parc Cient\u00edfic de la Universitat de Val\u00e8ncia","ror":"https://ror.org/04rb60x98","country_code":"ES","type":"education","lineage":["https://openalex.org/I2801097182"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Rafael J Mart\u00ednez","raw_affiliation_strings":["Instituto de Rob\u00f3tica y de Tecnolog\u00edas de la Informaci\u00f3n y la Comunicaci\u00f3n (IRTIC), Universitat de Val\u00e8ncia, C/Catedr\u00e1tico Jos\u00e9 Beltr\u00e1n , 2 46980 Paterna (Valencia), Spain"],"affiliations":[{"raw_affiliation_string":"Instituto de Rob\u00f3tica y de Tecnolog\u00edas de la Informaci\u00f3n y la Comunicaci\u00f3n (IRTIC), Universitat de Val\u00e8ncia, C/Catedr\u00e1tico Jos\u00e9 Beltr\u00e1n , 2 46980 Paterna (Valencia), Spain","institution_ids":["https://openalex.org/I2801097182"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038870441","display_name":"Javier Buceta","orcid":"https://orcid.org/0000-0003-1791-0011"},"institutions":[{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Javier Buceta","raw_affiliation_strings":["Institute for Integrative Systems Biology (I2SysBio), CSIC-UV, C/Catedr\u00e1tico Agust\u00edn Escardino Benlloch , 9 46980 Paterna (Valencia), Spain"],"affiliations":[{"raw_affiliation_string":"Institute for Integrative Systems Biology (I2SysBio), CSIC-UV, C/Catedr\u00e1tico Agust\u00edn Escardino Benlloch , 9 46980 Paterna (Valencia), Spain","institution_ids":["https://openalex.org/I4210152685"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5038870441","https://openalex.org/A5090302343"],"corresponding_institution_ids":["https://openalex.org/I2801097182","https://openalex.org/I4210152685"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4671,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.56848046,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"38","issue":"17","first_page":"4246","last_page":"4247"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10492","display_name":"Microtubule and mitosis dynamics","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mechanobiology","display_name":"Mechanobiology","score":0.8145684003829956},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7853891253471375},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.6627179980278015},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.5779411196708679},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5432624816894531},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4969682991504669},{"id":"https://openalex.org/keywords/software-versioning","display_name":"Software versioning","score":0.4636560380458832},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.33414649963378906},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.2668708562850952},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.24494144320487976},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.18753951787948608},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08873850107192993}],"concepts":[{"id":"https://openalex.org/C2780171871","wikidata":"https://www.wikidata.org/wiki/Q6804676","display_name":"Mechanobiology","level":2,"score":0.8145684003829956},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7853891253471375},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.6627179980278015},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.5779411196708679},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5432624816894531},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4969682991504669},{"id":"https://openalex.org/C198140048","wikidata":"https://www.wikidata.org/wiki/Q10859422","display_name":"Software versioning","level":3,"score":0.4636560380458832},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.33414649963378906},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.2668708562850952},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.24494144320487976},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.18753951787948608},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08873850107192993},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001703","descriptor_name":"Biophysics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001703","descriptor_name":"Biophysics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001703","descriptor_name":"Biophysics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D028042","descriptor_name":"Pimpinella","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D028042","descriptor_name":"Pimpinella","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D028042","descriptor_name":"Pimpinella","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac511","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac511","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35856714","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35856714","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/337251","is_oa":false,"landing_page_url":"http://hdl.handle.net/10261/337251","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4703648809","display_name":null,"funder_award_id":"PID2019-105566GB-I00","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":5,"referenced_works":["https://openalex.org/W1983420972","https://openalex.org/W2011020098","https://openalex.org/W2149778176","https://openalex.org/W2767369251","https://openalex.org/W3038008293"],"related_works":["https://openalex.org/W4291130702","https://openalex.org/W4389387458","https://openalex.org/W3025150339","https://openalex.org/W3125643364","https://openalex.org/W1990851605","https://openalex.org/W2564889688","https://openalex.org/W4383532732","https://openalex.org/W2621226137","https://openalex.org/W2887158672","https://openalex.org/W2009604192"],"abstract_inverted_index":{"http://github.com/lsym-uveg/anise":[0],"(server:":[1],"http://lsymserver.uv.es/lsym/ANISE).":[2]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2022-07-21T00:00:00"}
