{"id":"https://openalex.org/W4296774836","doi":"https://doi.org/10.1093/bioinformatics/btac496","title":"Insights into performance evaluation of compound\u2013protein interaction prediction methods","display_name":"Insights into performance evaluation of compound\u2013protein interaction prediction methods","publication_year":2022,"publication_date":"2022-09-01","ids":{"openalex":"https://openalex.org/W4296774836","doi":"https://doi.org/10.1093/bioinformatics/btac496","pmid":"https://pubmed.ncbi.nlm.nih.gov/36124806"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac496","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac496","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii75/49886471/btac496.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii75/49886471/btac496.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058797103","display_name":"Adiba Yaseen","orcid":"https://orcid.org/0000-0001-6794-1364"},"institutions":[{"id":"https://openalex.org/I134276161","display_name":"Pakistan Institute of Engineering and Applied Sciences","ror":"https://ror.org/04d4mbk19","country_code":"PK","type":"education","lineage":["https://openalex.org/I134276161"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Adiba Yaseen","raw_affiliation_strings":["Department of Computer and Information Sciences (DCIS), Pakistan Institute of Engineering and Applied Sciences (PIEAS) , Islamabad 45650, Pakistan"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences (DCIS), Pakistan Institute of Engineering and Applied Sciences (PIEAS) , Islamabad 45650, Pakistan","institution_ids":["https://openalex.org/I134276161"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060659437","display_name":"Imran Amin","orcid":"https://orcid.org/0000-0003-3063-4103"},"institutions":[{"id":"https://openalex.org/I1308171952","display_name":"National Institute for Biotechnology and Genetic Engineering","ror":"https://ror.org/01bh91531","country_code":"PK","type":"education","lineage":["https://openalex.org/I1308171952"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Imran Amin","raw_affiliation_strings":["National Institute for Biotechnology and Genetic Engineering , Faisalabad 38000, Pakistan"],"affiliations":[{"raw_affiliation_string":"National Institute for Biotechnology and Genetic Engineering , Faisalabad 38000, Pakistan","institution_ids":["https://openalex.org/I1308171952"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029709862","display_name":"Naeem Akhter","orcid":"https://orcid.org/0000-0001-5922-1674"},"institutions":[{"id":"https://openalex.org/I134276161","display_name":"Pakistan Institute of Engineering and Applied Sciences","ror":"https://ror.org/04d4mbk19","country_code":"PK","type":"education","lineage":["https://openalex.org/I134276161"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Naeem Akhter","raw_affiliation_strings":["Department of Computer and Information Sciences (DCIS), Pakistan Institute of Engineering and Applied Sciences (PIEAS) , Islamabad 45650, Pakistan"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Information Sciences (DCIS), Pakistan Institute of Engineering and Applied Sciences (PIEAS) , Islamabad 45650, Pakistan","institution_ids":["https://openalex.org/I134276161"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005013902","display_name":"Asa Ben\u2010Hur","orcid":"https://orcid.org/0000-0001-8269-6942"},"institutions":[{"id":"https://openalex.org/I92446798","display_name":"Colorado State University","ror":"https://ror.org/03k1gpj17","country_code":"US","type":"education","lineage":["https://openalex.org/I92446798"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Asa Ben-Hur","raw_affiliation_strings":["Department of Computer Science, Colorado State University , Fort Collins, CO 80523, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Colorado State University , Fort Collins, CO 80523, USA","institution_ids":["https://openalex.org/I92446798"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086173090","display_name":"Fayyaz Minhas","orcid":"https://orcid.org/0000-0001-9129-1189"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Fayyaz Minhas","raw_affiliation_strings":["Department of Computer Science, University of Warwick , Coventry CV4 7AL, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Warwick , Coventry CV4 7AL, UK","institution_ids":["https://openalex.org/I39555362"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5086173090"],"corresponding_institution_ids":["https://openalex.org/I39555362"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3149,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.82569327,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"38","issue":"Supplement_2","first_page":"ii75","last_page":"ii81"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9779999852180481,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7854291200637817},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.7084798812866211},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.6844996809959412},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5569333434104919},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5563689470291138},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.5184168815612793},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5056917667388916},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4343019723892212},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.42853325605392456},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09168609976768494}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7854291200637817},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7084798812866211},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.6844996809959412},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5569333434104919},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5563689470291138},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.5184168815612793},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5056917667388916},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4343019723892212},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.42853325605392456},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09168609976768494},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000085962","descriptor_name":"Angiotensin-Converting Enzyme 2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000085962","descriptor_name":"Angiotensin-Converting Enzyme 2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000085962","descriptor_name":"Angiotensin-Converting Enzyme 2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac496","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac496","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii75/49886471/btac496.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36124806","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36124806","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:wrap.warwick.ac.uk:169654","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400665","display_name":"Warwick Research Archive Portal (University of Warwick)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39555362","host_organization_name":"University of Warwick","host_organization_lineage":["https://openalex.org/I39555362"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac496","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac496","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii75/49886471/btac496.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4296774836.pdf","grobid_xml":"https://content.openalex.org/works/W4296774836.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1263867514","https://openalex.org/W1964513093","https://openalex.org/W1968319881","https://openalex.org/W2009313526","https://openalex.org/W2060139591","https://openalex.org/W2080642200","https://openalex.org/W2097606916","https://openalex.org/W2100563036","https://openalex.org/W2100672820","https://openalex.org/W2108069034","https://openalex.org/W2127771490","https://openalex.org/W2135007932","https://openalex.org/W2136957665","https://openalex.org/W2139736926","https://openalex.org/W2148145769","https://openalex.org/W2167212630","https://openalex.org/W2204695023","https://openalex.org/W2259538443","https://openalex.org/W2261189595","https://openalex.org/W2472384656","https://openalex.org/W2586236648","https://openalex.org/W2615220668","https://openalex.org/W2767969791","https://openalex.org/W2785947426","https://openalex.org/W2860192827","https://openalex.org/W2889321024","https://openalex.org/W2890911678","https://openalex.org/W2911871527","https://openalex.org/W2918239264","https://openalex.org/W2966848807","https://openalex.org/W2969325194","https://openalex.org/W2989848927","https://openalex.org/W3021338900","https://openalex.org/W3028589594","https://openalex.org/W3096561213","https://openalex.org/W3134958209","https://openalex.org/W3188579603","https://openalex.org/W4256013174","https://openalex.org/W6674784443","https://openalex.org/W6675473225","https://openalex.org/W6737898925","https://openalex.org/W6753998098","https://openalex.org/W6777639264"],"related_works":["https://openalex.org/W1976073696","https://openalex.org/W2378211422","https://openalex.org/W3184846108","https://openalex.org/W3165804307","https://openalex.org/W2745001401","https://openalex.org/W4321353415","https://openalex.org/W2130974462","https://openalex.org/W3015936091","https://openalex.org/W972276598","https://openalex.org/W4246352526"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}