{"id":"https://openalex.org/W4296777278","doi":"https://doi.org/10.1093/bioinformatics/btac481","title":"Linking cells across single-cell modalities by synergistic matching of neighborhood structure","display_name":"Linking cells across single-cell modalities by synergistic matching of neighborhood structure","publication_year":2022,"publication_date":"2022-08-24","ids":{"openalex":"https://openalex.org/W4296777278","doi":"https://doi.org/10.1093/bioinformatics/btac481","pmid":"https://pubmed.ncbi.nlm.nih.gov/36124797"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii148/49886332/btac481.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii148/49886332/btac481.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051558318","display_name":"Borislav H. Hristov","orcid":"https://orcid.org/0000-0002-1414-8378"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Borislav H Hristov","raw_affiliation_strings":["Department of Genome Sciences"],"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091674429","display_name":"Jeffrey A. Bilmes","orcid":"https://orcid.org/0000-0002-7372-8778"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey A Bilmes","raw_affiliation_strings":["Department of Electrical Engineering","Paul G. Allen School of Computer Science and Engineering, University of Washington , Seattle, WA 98195, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering","institution_ids":[]},{"raw_affiliation_string":"Paul G. Allen School of Computer Science and Engineering, University of Washington , Seattle, WA 98195, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057375933","display_name":"William Stafford Noble","orcid":"https://orcid.org/0000-0001-7283-4715"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Stafford Noble","raw_affiliation_strings":["Department of Genome Sciences","Paul G. Allen School of Computer Science and Engineering, University of Washington , Seattle, WA 98195, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences","institution_ids":[]},{"raw_affiliation_string":"Paul G. Allen School of Computer Science and Engineering, University of Washington , Seattle, WA 98195, USA","institution_ids":["https://openalex.org/I201448701"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5051558318"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3431,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.55480985,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"38","issue":"Supplement_2","first_page":"ii148","last_page":"ii154"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9758999943733215,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/modalities","display_name":"Modalities","score":0.7640460729598999},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.7414060831069946},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6178560853004456},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4011898636817932},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18717139959335327},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15404969453811646},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.10537835955619812}],"concepts":[{"id":"https://openalex.org/C2779903281","wikidata":"https://www.wikidata.org/wiki/Q6888026","display_name":"Modalities","level":2,"score":0.7640460729598999},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.7414060831069946},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6178560853004456},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4011898636817932},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18717139959335327},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15404969453811646},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.10537835955619812},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii148/49886332/btac481.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36124797","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36124797","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9486587","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9486587","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii148/49886332/btac481.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Sustainable cities and communities","score":0.7900000214576721,"id":"https://metadata.un.org/sdg/11"}],"awards":[{"id":"https://openalex.org/G2284120340","display_name":null,"funder_award_id":"ECCB2022","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8737913810","display_name":null,"funder_award_id":"U01 HG009395","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4296777278.pdf","grobid_xml":"https://content.openalex.org/works/W4296777278.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W2123012927","https://openalex.org/W2129997546","https://openalex.org/W2517636946","https://openalex.org/W2559655401","https://openalex.org/W2934716754","https://openalex.org/W2948469692","https://openalex.org/W2967290233","https://openalex.org/W2978997241","https://openalex.org/W2979911343","https://openalex.org/W2984472267","https://openalex.org/W3027051073","https://openalex.org/W3043558371","https://openalex.org/W3093858607","https://openalex.org/W3101592465","https://openalex.org/W3102434595","https://openalex.org/W3113863876","https://openalex.org/W3159101980","https://openalex.org/W3193570366","https://openalex.org/W4206087897","https://openalex.org/W4235019172","https://openalex.org/W4310530587","https://openalex.org/W4312182122","https://openalex.org/W4360999291","https://openalex.org/W6785996242"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2185469136","https://openalex.org/W2011264131","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4306353150","https://openalex.org/W2026860389"],"abstract_inverted_index":{"The":[0],"Synmatch":[1],"code":[2],"and":[3],"data":[4],"used":[5],"in":[6],"this":[7],"manuscript":[8],"are":[9],"available":[10],"at":[11],"https://github.com/Noble-Lab/synmatch.":[12]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3}],"updated_date":"2025-11-23T05:10:03.516525","created_date":"2025-10-10T00:00:00"}
