{"id":"https://openalex.org/W4296780664","doi":"https://doi.org/10.1093/bioinformatics/btac478","title":"GNN-SubNet: disease subnetwork detection with explainable graph neural networks","display_name":"GNN-SubNet: disease subnetwork detection with explainable graph neural networks","publication_year":2022,"publication_date":"2022-08-24","ids":{"openalex":"https://openalex.org/W4296780664","doi":"https://doi.org/10.1093/bioinformatics/btac478","pmid":"https://pubmed.ncbi.nlm.nih.gov/36124793"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac478","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac478","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii120/49886271/btac478.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii120/49886271/btac478.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008738759","display_name":"Bastian Pfeifer","orcid":"https://orcid.org/0000-0001-7035-9535"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Bastian Pfeifer","raw_affiliation_strings":["Institute for Medical Informatics Statistics and Documentation, Medical University Graz , Graz, Austria"],"affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics Statistics and Documentation, Medical University Graz , Graz, Austria","institution_ids":["https://openalex.org/I202276237"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078003904","display_name":"Anna Saranti","orcid":"https://orcid.org/0000-0002-1085-8428"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Anna Saranti","raw_affiliation_strings":["Institute for Medical Informatics Statistics and Documentation, Medical University Graz , Graz, Austria"],"affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics Statistics and Documentation, Medical University Graz , Graz, Austria","institution_ids":["https://openalex.org/I202276237"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034657358","display_name":"Andreas Holzinger","orcid":"https://orcid.org/0000-0002-6786-5194"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I92869138","display_name":"BOKU University","ror":"https://ror.org/057ff4y42","country_code":"AT","type":"education","lineage":["https://openalex.org/I92869138"]},{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]}],"countries":["AT","CA"],"is_corresponding":false,"raw_author_name":"Andreas Holzinger","raw_affiliation_strings":["Alberta Machine Intelligence Institute, University of Alberta , Edmonton, Canada","Human-Centered AI Lab, Department of Forest- and Soil Sciences, University of Natural Resources and Life Sciences Vienna , Vienna, Austria","Institute for Medical Informatics Statistics and Documentation, Medical University Graz , Graz, Austria"],"affiliations":[{"raw_affiliation_string":"Alberta Machine Intelligence Institute, University of Alberta , Edmonton, Canada","institution_ids":["https://openalex.org/I154425047"]},{"raw_affiliation_string":"Human-Centered AI Lab, Department of Forest- and Soil Sciences, University of Natural Resources and Life Sciences Vienna , Vienna, Austria","institution_ids":["https://openalex.org/I92869138"]},{"raw_affiliation_string":"Institute for Medical Informatics Statistics and Documentation, Medical University Graz , Graz, Austria","institution_ids":["https://openalex.org/I202276237"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5008738759"],"corresponding_institution_ids":["https://openalex.org/I202276237"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":5.2861,"has_fulltext":true,"cited_by_count":65,"citation_normalized_percentile":{"value":0.96995988,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"38","issue":"Supplement_2","first_page":"ii120","last_page":"ii126"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subnetwork","display_name":"Subnetwork","score":0.9691356420516968},{"id":"https://openalex.org/keywords/subnet","display_name":"Subnet","score":0.9051520824432373},{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.7804112434387207},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7645274996757507},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.5485057830810547},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4910566806793213},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.48868826031684875},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4227443337440491},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3697976768016815},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.20279201865196228},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.17448553442955017}],"concepts":[{"id":"https://openalex.org/C2780186347","wikidata":"https://www.wikidata.org/wiki/Q11414","display_name":"Subnetwork","level":2,"score":0.9691356420516968},{"id":"https://openalex.org/C21099817","wikidata":"https://www.wikidata.org/wiki/Q7631721","display_name":"Subnet","level":2,"score":0.9051520824432373},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.7804112434387207},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7645274996757507},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.5485057830810547},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4910566806793213},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.48868826031684875},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4227443337440491},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3697976768016815},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.20279201865196228},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.17448553442955017},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btac478","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac478","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii120/49886271/btac478.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36124793","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36124793","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac478","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac478","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/Supplement_2/ii120/49886271/btac478.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.5,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G4956428346","display_name":null,"funder_award_id":"Horizon 2020 research and innovatio","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5036817778","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innov","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G575360465","display_name":null,"funder_award_id":"P-32554","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"},{"id":"https://openalex.org/G604364710","display_name":null,"funder_award_id":"ECCB2022","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"},{"id":"https://openalex.org/G8029424273","display_name":null,"funder_award_id":"826078","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8184292771","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8633428685","display_name":null,"funder_award_id":"European Union's Horizon 2020 research and innovat","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8685055033","display_name":null,"funder_award_id":"P-3255","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321181","display_name":"Austrian Science Fund","ror":"https://ror.org/013tf3c58"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4296780664.pdf","grobid_xml":"https://content.openalex.org/works/W4296780664.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1511986666","https://openalex.org/W1856405414","https://openalex.org/W2021272672","https://openalex.org/W2062880716","https://openalex.org/W2116341502","https://openalex.org/W2131681506","https://openalex.org/W2140280811","https://openalex.org/W2767377392","https://openalex.org/W2786016794","https://openalex.org/W2904105652","https://openalex.org/W2907492528","https://openalex.org/W2917286209","https://openalex.org/W2970771711","https://openalex.org/W2972317931","https://openalex.org/W2997785591","https://openalex.org/W3003192283","https://openalex.org/W3003265726","https://openalex.org/W3011667710","https://openalex.org/W3036475827","https://openalex.org/W3099768174","https://openalex.org/W3107527779","https://openalex.org/W3124474911","https://openalex.org/W3152893301","https://openalex.org/W3156270925","https://openalex.org/W3185198219","https://openalex.org/W3188579603","https://openalex.org/W3210179814","https://openalex.org/W3213384164","https://openalex.org/W6757078134","https://openalex.org/W6767288045"],"related_works":["https://openalex.org/W2102539527","https://openalex.org/W2131631951","https://openalex.org/W2060724872","https://openalex.org/W2356206668","https://openalex.org/W4296780664","https://openalex.org/W4386946857","https://openalex.org/W4391585494","https://openalex.org/W2168810502","https://openalex.org/W4392930641","https://openalex.org/W1911510050"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":27},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":1}],"updated_date":"2026-03-24T08:02:53.985720","created_date":"2025-10-10T00:00:00"}
