{"id":"https://openalex.org/W4283823216","doi":"https://doi.org/10.1093/bioinformatics/btac445","title":"Gene regulatory network inference methodology for genomic and transcriptomic data acquired in genetically related heterozygote individuals","display_name":"Gene regulatory network inference methodology for genomic and transcriptomic data acquired in genetically related heterozygote individuals","publication_year":2022,"publication_date":"2022-07-06","ids":{"openalex":"https://openalex.org/W4283823216","doi":"https://doi.org/10.1093/bioinformatics/btac445","pmid":"https://pubmed.ncbi.nlm.nih.gov/35792837"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac445","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac445","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/17/4127/49889745/btac445.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/17/4127/49889745/btac445.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055392089","display_name":"Lise Pomi\u00e8s","orcid":"https://orcid.org/0000-0002-7297-1135"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lise Pomi\u00e8s","raw_affiliation_strings":["MIAT, Universit\u00e9 F\u00e9d\u00e9rale de Toulouse, INRAE , Castanet-Tolosan 31326, France"],"raw_orcid":"https://orcid.org/0000-0002-7297-1135","affiliations":[{"raw_affiliation_string":"MIAT, Universit\u00e9 F\u00e9d\u00e9rale de Toulouse, INRAE , Castanet-Tolosan 31326, France","institution_ids":["https://openalex.org/I4210088668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008589136","display_name":"C\u00e9line Brouard","orcid":"https://orcid.org/0000-0002-5574-7027"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"C\u00e9line Brouard","raw_affiliation_strings":["MIAT, Universit\u00e9 F\u00e9d\u00e9rale de Toulouse, INRAE , Castanet-Tolosan 31326, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MIAT, Universit\u00e9 F\u00e9d\u00e9rale de Toulouse, INRAE , Castanet-Tolosan 31326, France","institution_ids":["https://openalex.org/I4210088668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047783748","display_name":"Harold Durufl\u00e9","orcid":"https://orcid.org/0000-0002-6020-2822"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Harold Durufl\u00e9","raw_affiliation_strings":["LIPME, Universit\u00e9 de Toulouse, INRAE, CNRS , Castanet-Tolosan 31326, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIPME, Universit\u00e9 de Toulouse, INRAE, CNRS , Castanet-Tolosan 31326, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I17866349","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008473158","display_name":"\u00c9lise Maign\u00e9","orcid":"https://orcid.org/0000-0003-0716-4940"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"\u00c9lise Maign\u00e9","raw_affiliation_strings":["MIAT, Universit\u00e9 F\u00e9d\u00e9rale de Toulouse, INRAE , Castanet-Tolosan 31326, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MIAT, Universit\u00e9 F\u00e9d\u00e9rale de Toulouse, INRAE , Castanet-Tolosan 31326, France","institution_ids":["https://openalex.org/I4210088668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041164066","display_name":"Cl\u00e9ment Carr\u00e9","orcid":"https://orcid.org/0000-0002-9668-4288"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Cl\u00e9ment Carr\u00e9","raw_affiliation_strings":["MIAT, Universit\u00e9 F\u00e9d\u00e9rale de Toulouse, INRAE , Castanet-Tolosan 31326, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MIAT, Universit\u00e9 F\u00e9d\u00e9rale de Toulouse, INRAE , Castanet-Tolosan 31326, France","institution_ids":["https://openalex.org/I4210088668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077273451","display_name":"Louise Gody","orcid":"https://orcid.org/0000-0001-7069-4659"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Louise Gody","raw_affiliation_strings":["LIPME, Universit\u00e9 de Toulouse, INRAE, CNRS , Castanet-Tolosan 31326, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIPME, Universit\u00e9 de Toulouse, INRAE, CNRS , Castanet-Tolosan 31326, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I17866349","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010528109","display_name":"Fulya Tr\u00f6sser","orcid":"https://orcid.org/0000-0002-1692-8079"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fulya Tr\u00f6sser","raw_affiliation_strings":["MIAT, Universit\u00e9 F\u00e9d\u00e9rale de Toulouse, INRAE , Castanet-Tolosan 31326, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MIAT, Universit\u00e9 F\u00e9d\u00e9rale de Toulouse, INRAE , Castanet-Tolosan 31326, France","institution_ids":["https://openalex.org/I4210088668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026700325","display_name":"George Katsirelos","orcid":"https://orcid.org/0000-0002-3727-6698"},"institutions":[{"id":"https://openalex.org/I22248866","display_name":"AgroParisTech","ror":"https://ror.org/02kbmgc12","country_code":"FR","type":"education","lineage":["https://openalex.org/I22248866","https://openalex.org/I277688954"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"George Katsirelos","raw_affiliation_strings":["MIA-Paris, AgroParisTech, Universit\u00e9 Paris-Saclay, INRAE , Paris 75231, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MIA-Paris, AgroParisTech, Universit\u00e9 Paris-Saclay, INRAE , Paris 75231, France","institution_ids":["https://openalex.org/I22248866","https://openalex.org/I4210088668","https://openalex.org/I277688954"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065908579","display_name":"Brigitte Mangin","orcid":"https://orcid.org/0000-0002-2837-6136"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Brigitte Mangin","raw_affiliation_strings":["LIPME, Universit\u00e9 de Toulouse, INRAE, CNRS , Castanet-Tolosan 31326, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIPME, Universit\u00e9 de Toulouse, INRAE, CNRS , Castanet-Tolosan 31326, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I17866349","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020612114","display_name":"Nicolas Langlade","orcid":"https://orcid.org/0000-0002-5651-1446"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nicolas B Langlade","raw_affiliation_strings":["LIPME, Universit\u00e9 de Toulouse, INRAE, CNRS , Castanet-Tolosan 31326, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIPME, Universit\u00e9 de Toulouse, INRAE, CNRS , Castanet-Tolosan 31326, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I17866349","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065436134","display_name":"Simon de Givry","orcid":"https://orcid.org/0000-0002-2242-0458"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Simon de Givry","raw_affiliation_strings":["MIAT, Universit\u00e9 F\u00e9d\u00e9rale de Toulouse, INRAE , Castanet-Tolosan 31326, France"],"raw_orcid":"https://orcid.org/0000-0002-2242-0458","affiliations":[{"raw_affiliation_string":"MIAT, Universit\u00e9 F\u00e9d\u00e9rale de Toulouse, INRAE , Castanet-Tolosan 31326, France","institution_ids":["https://openalex.org/I4210088668"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.08656716,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"38","issue":"17","first_page":"4127","last_page":"4134"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.447299987077713,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.447299987077713,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12742","display_name":"Sunflower and Safflower Cultivation","score":0.08340000361204147,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.07090000063180923,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6924722194671631},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5509820580482483},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5274230241775513},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4928005039691925},{"id":"https://openalex.org/keywords/bayesian-network","display_name":"Bayesian network","score":0.46107247471809387},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4549299478530884},{"id":"https://openalex.org/keywords/frequentist-inference","display_name":"Frequentist inference","score":0.4539584219455719},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44390010833740234},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3953983783721924},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.39220792055130005},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3559996485710144},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3547956347465515},{"id":"https://openalex.org/keywords/bayesian-inference","display_name":"Bayesian inference","score":0.3440789580345154},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33359673619270325},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.15977543592453003}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6924722194671631},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5509820580482483},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5274230241775513},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4928005039691925},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.46107247471809387},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4549299478530884},{"id":"https://openalex.org/C162376815","wikidata":"https://www.wikidata.org/wiki/Q2158281","display_name":"Frequentist inference","level":4,"score":0.4539584219455719},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44390010833740234},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3953983783721924},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.39220792055130005},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3559996485710144},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3547956347465515},{"id":"https://openalex.org/C160234255","wikidata":"https://www.wikidata.org/wiki/Q812535","display_name":"Bayesian inference","level":3,"score":0.3440789580345154},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33359673619270325},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.15977543592453003}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006579","descriptor_name":"Heterozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006579","descriptor_name":"Heterozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006579","descriptor_name":"Heterozygote","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac445","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac445","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/17/4127/49889745/btac445.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35792837","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35792837","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-03776333v1","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-03776333","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2022, 38 (17), pp.4127-4134. &#x27E8;10.1093/bioinformatics/btac445&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac445","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac445","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/17/4127/49889745/btac445.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5400000214576721,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G2814417579","display_name":null,"funder_award_id":"ANR-11-BTBR-0005","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3568386828","display_name":null,"funder_award_id":"ANR-11-BTBR-0005, 2012-2020","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4283823216.pdf","grobid_xml":"https://content.openalex.org/works/W4283823216.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W273955616","https://openalex.org/W1517993545","https://openalex.org/W1851422093","https://openalex.org/W1952732944","https://openalex.org/W1968823959","https://openalex.org/W2067715889","https://openalex.org/W2091458978","https://openalex.org/W2092539586","https://openalex.org/W2109384743","https://openalex.org/W2126551563","https://openalex.org/W2127024619","https://openalex.org/W2129243798","https://openalex.org/W2132555912","https://openalex.org/W2134036574","https://openalex.org/W2135046866","https://openalex.org/W2139997707","https://openalex.org/W2148559413","https://openalex.org/W2148860875","https://openalex.org/W2157236929","https://openalex.org/W2157593856","https://openalex.org/W2162703860","https://openalex.org/W2520902279","https://openalex.org/W2533355719","https://openalex.org/W2557445311","https://openalex.org/W2587292373","https://openalex.org/W2589953121","https://openalex.org/W2606363045","https://openalex.org/W2616265326","https://openalex.org/W2726657838","https://openalex.org/W2791681873","https://openalex.org/W2797884775","https://openalex.org/W2904970666","https://openalex.org/W2910221578","https://openalex.org/W2911964244","https://openalex.org/W2924358573","https://openalex.org/W2950513643","https://openalex.org/W2952835495","https://openalex.org/W2955837000","https://openalex.org/W2963819344","https://openalex.org/W2975492996","https://openalex.org/W2998742848","https://openalex.org/W3000805896","https://openalex.org/W3025902542","https://openalex.org/W3042738408","https://openalex.org/W3089005784","https://openalex.org/W3105340263","https://openalex.org/W3112852185","https://openalex.org/W3121338743","https://openalex.org/W3122285446","https://openalex.org/W4235667863","https://openalex.org/W6610017368","https://openalex.org/W6613812410"],"related_works":["https://openalex.org/W2077878098","https://openalex.org/W1506744765","https://openalex.org/W2944091050","https://openalex.org/W2998817056","https://openalex.org/W2904258669","https://openalex.org/W4313815718","https://openalex.org/W996380913","https://openalex.org/W2024084279","https://openalex.org/W2920185967","https://openalex.org/W2921837939"],"abstract_inverted_index":{"MOTIVATION:":[0],"Inferring":[1],"gene":[2,39,46],"regulatory":[3],"networks":[4,97,107],"in":[5,25,53,63,139],"non-independent":[6],"genetically":[7],"related":[8],"panels":[9],"is":[10,208],"a":[11,69,152,180,192],"methodological":[12],"challenge.":[13],"This":[14],"hampers":[15],"evolutionary":[16],"and":[17,41,50,59,79,93,102,117,122,132,205],"biological":[18],"studies":[19],"using":[20],"heterozygote":[21],"individuals":[22],"such":[23],"as":[24,52],"wild":[26],"sunflower":[27,64,175],"populations":[28],"or":[29],"cultivated":[30],"hybrids.":[31,65,176],"RESULTS:":[32],"First,":[33],"we":[34,67,166],"simulated":[35],"100":[36],"datasets":[37,146],"of":[38,96,159,183],"expressions":[40],"polymorphisms,":[42],"displaying":[43],"the":[44,104,140,160],"same":[45],"expression":[47],"distributions,":[48],"heterozygosities":[49],"heritabilities":[51],"our":[54,149,168],"dataset":[55,158,173],"including":[56],"173":[57],"genes":[58,116,185],"353":[60],"genotypes":[61],"measured":[62],"Secondly,":[66],"performed":[68],"meta-analysis":[70],"based":[71],"on":[72,126,144],"six":[73],"inference":[74,95,200],"methods":[75],"[least":[76],"absolute":[77],"shrinkage":[78],"selection":[80],"operator":[81],"(Lasso),":[82],"Random":[83,88],"Forests,":[84],"Bayesian":[85],"Networks,":[86],"Markov":[87],"Fields,":[89],"Ordinary":[90],"Least":[91],"Square":[92],"fast":[94],"from":[98,174],"directed":[99],"regulation":[100],"(Findr)]":[101],"selected":[103],"minimal":[105],"density":[106],"for":[108,156],"better":[109],"accuracy":[110],"with":[111,191],"64":[112],"edges":[113,134],"connecting":[114],"79":[115],"0.35":[118],"area":[119],"under":[120],"precision":[121],"recall":[123],"(AUPR)":[124],"score":[125,155],"average.":[127],"We":[128,177],"identified":[129],"that":[130],"triangles":[131],"mutual":[133],"are":[135,216],"prone":[136],"to":[137,170,203],"errors":[138],"inferred":[141,179],"networks.":[142],"Applied":[143],"classical":[145],"without":[147],"heterozygotes,":[148],"strategy":[150],"produced":[151],"0.65":[153],"AUPR":[154],"one":[157],"DREAM5":[161],"Systems":[162],"Genetics":[163],"Challenge.":[164],"Finally,":[165],"applied":[167],"method":[169],"an":[171],"experimental":[172],"successfully":[178],"network":[181],"composed":[182],"105":[184],"connected":[186,194],"by":[187],"106":[188],"putative":[189],"regulations":[190],"major":[193],"component.":[195],"AVAILABILITY":[196],"AND":[197],"IMPLEMENTATION:":[198],"Our":[199],"methodology":[201],"dedicated":[202],"genomic":[204],"transcriptomic":[206],"data":[207,215],"available":[209,217],"at":[210,218],"https://forgemia.inra.fr/sunrise/inference_methods.":[211],"SUPPLEMENTARY":[212],"INFORMATION:":[213],"Supplementary":[214],"Bioinformatics":[219],"online.":[220]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
