{"id":"https://openalex.org/W4283716699","doi":"https://doi.org/10.1093/bioinformatics/btac429","title":"RAPPPID: towards generalizable protein interaction prediction with AWD-LSTM twin networks","display_name":"RAPPPID: towards generalizable protein interaction prediction with AWD-LSTM twin networks","publication_year":2022,"publication_date":"2022-06-30","ids":{"openalex":"https://openalex.org/W4283716699","doi":"https://doi.org/10.1093/bioinformatics/btac429","pmid":"https://pubmed.ncbi.nlm.nih.gov/35771595"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac429","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac429","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/16/3958/49889973/btac429.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/16/3958/49889973/btac429.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028119816","display_name":"Joseph Szymborski","orcid":"https://orcid.org/0000-0003-1559-6225"},"institutions":[{"id":"https://openalex.org/I4210164802","display_name":"Mila - Quebec Artificial Intelligence Institute","ror":"https://ror.org/05c22rx21","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210164802"]},{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Joseph Szymborski","raw_affiliation_strings":["Department of Electrical and Computer Engineering, McGill University , Montr\u00e9al, QC H3A 0G4, Canada","Mila, Qu\u00e9bec AI Institute , Montr\u00e9al, QC H2S 3H1, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, McGill University , Montr\u00e9al, QC H3A 0G4, Canada","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"Mila, Qu\u00e9bec AI Institute , Montr\u00e9al, QC H2S 3H1, Canada","institution_ids":["https://openalex.org/I4210164802"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009196285","display_name":"Amin Emad","orcid":"https://orcid.org/0000-0002-5108-4887"},"institutions":[{"id":"https://openalex.org/I4210164802","display_name":"Mila - Quebec Artificial Intelligence Institute","ror":"https://ror.org/05c22rx21","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210164802"]},{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Amin Emad","raw_affiliation_strings":["Department of Electrical and Computer Engineering, McGill University , Montr\u00e9al, QC H3A 0G4, Canada","Mila, Qu\u00e9bec AI Institute , Montr\u00e9al, QC H2S 3H1, Canada","The Rosalind and Morris Goodman Cancer Institute , Montr\u00e9al, QC H3A 1A3, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, McGill University , Montr\u00e9al, QC H3A 0G4, Canada","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"Mila, Qu\u00e9bec AI Institute , Montr\u00e9al, QC H2S 3H1, Canada","institution_ids":["https://openalex.org/I4210164802"]},{"raw_affiliation_string":"The Rosalind and Morris Goodman Cancer Institute , Montr\u00e9al, QC H3A 1A3, Canada","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5028119816"],"corresponding_institution_ids":["https://openalex.org/I4210164802","https://openalex.org/I5023651"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.7774,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.91572201,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"38","issue":"16","first_page":"3958","last_page":"3967"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.790174126625061},{"id":"https://openalex.org/keywords/regularization","display_name":"Regularization (linguistics)","score":0.6808255910873413},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6402668952941895},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5530562400817871},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5307493209838867},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.47316059470176697},{"id":"https://openalex.org/keywords/training-set","display_name":"Training set","score":0.4484460949897766},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.43473827838897705},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42528679966926575}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.790174126625061},{"id":"https://openalex.org/C2776135515","wikidata":"https://www.wikidata.org/wiki/Q17143721","display_name":"Regularization (linguistics)","level":2,"score":0.6808255910873413},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6402668952941895},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5530562400817871},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5307493209838867},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.47316059470176697},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.4484460949897766},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.43473827838897705},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42528679966926575},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002450","descriptor_name":"Cell Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btac429","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac429","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/16/3958/49889973/btac429.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35771595","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35771595","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac429","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac429","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/16/3958/49889973/btac429.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1597412403","display_name":null,"funder_award_id":"RGPIN-","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G2165548363","display_name":null,"funder_award_id":"Canada","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G3216283581","display_name":null,"funder_award_id":"RGPIN-201","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G4450149547","display_name":null,"funder_award_id":"RGPIN-2019-04460","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G6221715925","display_name":null,"funder_award_id":"RGPIN","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G8284766523","display_name":null,"funder_award_id":"(NSERC)","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G832689143","display_name":null,"funder_award_id":"RGPIN-2019","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320310638","display_name":"McGill University","ror":"https://ror.org/01pxwe438"},{"id":"https://openalex.org/F4320314000","display_name":"Compute Canada","ror":"https://ror.org/03ty8yr27"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4283716699.pdf","grobid_xml":"https://content.openalex.org/works/W4283716699.grobid-xml"},"referenced_works_count":70,"referenced_works":["https://openalex.org/W105033414","https://openalex.org/W1591801644","https://openalex.org/W1598796236","https://openalex.org/W1990200948","https://openalex.org/W1995683190","https://openalex.org/W2008840001","https://openalex.org/W2014549225","https://openalex.org/W2015214828","https://openalex.org/W2018661561","https://openalex.org/W2018687970","https://openalex.org/W2038707667","https://openalex.org/W2043764521","https://openalex.org/W2045777307","https://openalex.org/W2055043387","https://openalex.org/W2064675550","https://openalex.org/W2095705004","https://openalex.org/W2099862356","https://openalex.org/W2105707485","https://openalex.org/W2130479394","https://openalex.org/W2130687290","https://openalex.org/W2131562240","https://openalex.org/W2136957665","https://openalex.org/W2143210482","https://openalex.org/W2149310258","https://openalex.org/W2158197251","https://openalex.org/W2158714788","https://openalex.org/W2171590421","https://openalex.org/W2211041313","https://openalex.org/W2524367868","https://openalex.org/W2534390616","https://openalex.org/W2616561032","https://openalex.org/W2618529956","https://openalex.org/W2739980134","https://openalex.org/W2896457183","https://openalex.org/W2900569176","https://openalex.org/W2908914784","https://openalex.org/W2943495267","https://openalex.org/W2950761565","https://openalex.org/W2957157683","https://openalex.org/W2957436444","https://openalex.org/W2963173418","https://openalex.org/W2963979492","https://openalex.org/W2972716534","https://openalex.org/W3004238495","https://openalex.org/W3041180919","https://openalex.org/W3093053585","https://openalex.org/W3111174583","https://openalex.org/W3128633047","https://openalex.org/W3177828909","https://openalex.org/W3211402536","https://openalex.org/W4239205288","https://openalex.org/W4287113023","https://openalex.org/W4288257146","https://openalex.org/W4294216483","https://openalex.org/W4299518610","https://openalex.org/W4299838440","https://openalex.org/W6635446068","https://openalex.org/W6635679246","https://openalex.org/W6674330103","https://openalex.org/W6742632731","https://openalex.org/W6749107692","https://openalex.org/W6755207826","https://openalex.org/W6755651582","https://openalex.org/W6758062058","https://openalex.org/W6762363781","https://openalex.org/W6781550413","https://openalex.org/W6787324736","https://openalex.org/W6790428460","https://openalex.org/W6797640568","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4254199101","https://openalex.org/W4300427796","https://openalex.org/W4224009465","https://openalex.org/W1670153145","https://openalex.org/W4306674287","https://openalex.org/W4286629047","https://openalex.org/W2051864124","https://openalex.org/W3023929447","https://openalex.org/W3081644756"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":2}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
