{"id":"https://openalex.org/W4283735702","doi":"https://doi.org/10.1093/bioinformatics/btac425","title":"mapDATAge: a ShinyR package to chart ancient DNA data through space and time","display_name":"mapDATAge: a ShinyR package to chart ancient DNA data through space and time","publication_year":2022,"publication_date":"2022-06-30","ids":{"openalex":"https://openalex.org/W4283735702","doi":"https://doi.org/10.1093/bioinformatics/btac425","pmid":"https://pubmed.ncbi.nlm.nih.gov/35771611"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac425","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac425","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bioinformatics/btac425","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083686851","display_name":"Xuexue Liu","orcid":"https://orcid.org/0000-0002-6871-2640"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4400009051","display_name":"Centre d'Anthropobiologie et de G\u00e9nomique de Toulouse","ror":"https://ror.org/045p8nc06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4400009051","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Xuexue Liu","raw_affiliation_strings":["Centre for Anthropobiology and Genomics of Toulouse, CNRS UMR 5288, Universit\u00e9 de Toulouse, Universit\u00e9 Paul Sabatier , Toulouse 31000, France"],"raw_orcid":"https://orcid.org/0000-0002-6871-2640","affiliations":[{"raw_affiliation_string":"Centre for Anthropobiology and Genomics of Toulouse, CNRS UMR 5288, Universit\u00e9 de Toulouse, Universit\u00e9 Paul Sabatier , Toulouse 31000, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I17866349","https://openalex.org/I4400009051"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032664670","display_name":"Ludovic Orlando","orcid":"https://orcid.org/0000-0003-3936-1850"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I134560555","display_name":"Universit\u00e9 Toulouse III - Paul Sabatier","ror":"https://ror.org/02v6kpv12","country_code":"FR","type":"education","lineage":["https://openalex.org/I134560555"]},{"id":"https://openalex.org/I17866349","display_name":"Universit\u00e9 F\u00e9d\u00e9rale de Toulouse Midi-Pyr\u00e9n\u00e9es","ror":"https://ror.org/004raaa70","country_code":"FR","type":"education","lineage":["https://openalex.org/I17866349"]},{"id":"https://openalex.org/I4400009051","display_name":"Centre d'Anthropobiologie et de G\u00e9nomique de Toulouse","ror":"https://ror.org/045p8nc06","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4400009051","https://openalex.org/I4405258862"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ludovic Orlando","raw_affiliation_strings":["Centre for Anthropobiology and Genomics of Toulouse, CNRS UMR 5288, Universit\u00e9 de Toulouse, Universit\u00e9 Paul Sabatier , Toulouse 31000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Anthropobiology and Genomics of Toulouse, CNRS UMR 5288, Universit\u00e9 de Toulouse, Universit\u00e9 Paul Sabatier , Toulouse 31000, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I17866349","https://openalex.org/I4400009051"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":2921,"currency":"EUR","value_usd":3150},"fwci":1.0092,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.77117666,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"38","issue":"16","first_page":"3992","last_page":"3994"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.9686999917030334,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.9686999917030334,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12749","display_name":"Race, Genetics, and Society","score":0.005100000184029341,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12090","display_name":"Language and cultural evolution","score":0.004100000020116568,"subfield":{"id":"https://openalex.org/subfields/3316","display_name":"Cultural Studies"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7348296046257019},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.5421221852302551},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.5055782794952393},{"id":"https://openalex.org/keywords/haplogroup","display_name":"Haplogroup","score":0.4926789402961731},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4684923589229584},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.42768311500549316},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.3937162160873413},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38341018557548523},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34022825956344604},{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.1704198122024536},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.17009013891220093},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1507839858531952},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11324018239974976},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07874917984008789},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.06822013854980469}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7348296046257019},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.5421221852302551},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.5055782794952393},{"id":"https://openalex.org/C201526758","wikidata":"https://www.wikidata.org/wiki/Q80686","display_name":"Haplogroup","level":5,"score":0.4926789402961731},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4684923589229584},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.42768311500549316},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3937162160873413},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38341018557548523},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34022825956344604},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.1704198122024536},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.17009013891220093},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1507839858531952},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11324018239974976},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07874917984008789},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.06822013854980469},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000072441","descriptor_name":"DNA, Ancient","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072441","descriptor_name":"DNA, Ancient","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000072441","descriptor_name":"DNA, Ancient","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btac425","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac425","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35771611","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35771611","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-03827855v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03827855","pdf_url":"https://hal.science/hal-03827855/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2022, 38 (16), pp.3992-3994. &#x27E8;10.1093/bioinformatics/btac425&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-04781153v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04781153","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/16/3992/45300853/btac425.pdf","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2022, 38 (16), pp.3992-3994. &#x27E8;10.1093/bioinformatics/btac425&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9364369","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9364369","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac425","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac425","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.44999998807907104}],"awards":[{"id":"https://openalex.org/G1079600388","display_name":"Unveiling the true historical and biological origins of key phenotypes in modern domestic horses","funder_award_id":"101027750","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G434337789","display_name":null,"funder_award_id":"HORIZON2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6678677779","display_name":null,"funder_award_id":"681605","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W2174026811","https://openalex.org/W2575914858","https://openalex.org/W2608850084","https://openalex.org/W2943362524","https://openalex.org/W2952388994","https://openalex.org/W3009171061","https://openalex.org/W3014356442","https://openalex.org/W3033485317","https://openalex.org/W3130861457","https://openalex.org/W3206272465","https://openalex.org/W6790580896"],"related_works":["https://openalex.org/W2036021480","https://openalex.org/W2546377002","https://openalex.org/W4285209474","https://openalex.org/W22571951","https://openalex.org/W2046541848","https://openalex.org/W2791776396","https://openalex.org/W2022968056","https://openalex.org/W4384009753","https://openalex.org/W2098339479","https://openalex.org/W3214341251"],"abstract_inverted_index":{"SUMMARY:":[0],"Ancient":[1],"DNA":[2,72],"datasets":[3],"are":[4,94],"increasingly":[5],"difficult":[6],"to":[7,20],"visualize":[8],"for":[9,25,66],"users":[10],"lacking":[11],"computational":[12],"experience.":[13],"Here,":[14],"we":[15],"describe":[16],"mapDATAge,":[17],"which":[18],"aims":[19],"provide":[21],"user-friendly":[22],"automated":[23],"modules":[24],"the":[26,46],"interactive":[27],"mapping":[28],"of":[29,50,53],"allele,":[30],"haplogroup":[31],"and/or":[32],"ancestry":[33],"distributions":[34],"through":[35,74],"space":[36],"and":[37,48],"time.":[38],"mapDATAge":[39,59],"enhances":[40],"collaborative":[41],"data":[42,73,93],"sharing":[43],"while":[44],"assisting":[45],"assessment":[47],"reporting":[49],"spatiotemporal":[51,68],"patterns":[52,69],"genetic":[54],"changes.":[55],"AVAILABILITY":[56],"AND":[57],"IMPLEMENTATION:":[58],"is":[60,80],"a":[61,75],"Shiny":[62],"R":[63],"application":[64],"designed":[65],"exploring":[67],"in":[70,87],"ancient":[71],"graphical":[76],"user":[77],"interface.":[78],"It":[79],"freely":[81],"available":[82,95],"under":[83],"GNU":[84],"Public":[85],"License":[86],"Github:":[88],"https://github.com/xuefenfei712/mapDATAge.":[89],"SUPPLEMENTARY":[90],"INFORMATION:":[91],"Supplementary":[92],"at":[96],"Bioinformatics":[97],"online.":[98]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2022,"cited_by_count":1}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
