{"id":"https://openalex.org/W4283447811","doi":"https://doi.org/10.1093/bioinformatics/btac413","title":"XSI\u2014a genotype compression tool for compressive genomics in large biobanks","display_name":"XSI\u2014a genotype compression tool for compressive genomics in large biobanks","publication_year":2022,"publication_date":"2022-06-24","ids":{"openalex":"https://openalex.org/W4283447811","doi":"https://doi.org/10.1093/bioinformatics/btac413","pmid":"https://pubmed.ncbi.nlm.nih.gov/35748697"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac413","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac413","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/15/3778/45213127/btac413.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/15/3778/45213127/btac413.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058996303","display_name":"Rick Wertenbroek","orcid":"https://orcid.org/0000-0003-4114-6615"},"institutions":[{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Rick Wertenbroek","raw_affiliation_strings":["Department of Computational Biology, University of Lausanne , Lausanne 1015, Switzerland","School of Management and Engineering Vaud (HEIG-VD), HES-SO University of Applied Sciences and Arts Western Switzerland , Yverdon-les-Bains 1401, Switzerland"],"raw_orcid":"https://orcid.org/0000-0003-4114-6615","affiliations":[{"raw_affiliation_string":"Department of Computational Biology, University of Lausanne , Lausanne 1015, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"School of Management and Engineering Vaud (HEIG-VD), HES-SO University of Applied Sciences and Arts Western Switzerland , Yverdon-les-Bains 1401, Switzerland","institution_ids":["https://openalex.org/I173439891"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030162729","display_name":"Simone Rubinacci","orcid":"https://orcid.org/0000-0002-7725-4813"},"institutions":[{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Simone Rubinacci","raw_affiliation_strings":["Department of Computational Biology, University of Lausanne , Lausanne 1015, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Biology, University of Lausanne , Lausanne 1015, Switzerland","institution_ids":["https://openalex.org/I97565354"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065825020","display_name":"Ioannis X\u00e9narios","orcid":"https://orcid.org/0000-0002-3413-6841"},"institutions":[{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ioannis Xenarios","raw_affiliation_strings":["Department of Computational Biology, University of Lausanne , Lausanne 1015, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Biology, University of Lausanne , Lausanne 1015, Switzerland","institution_ids":["https://openalex.org/I97565354"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071713639","display_name":"Yann Thoma","orcid":"https://orcid.org/0000-0003-4374-6104"},"institutions":[{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Yann Thoma","raw_affiliation_strings":["School of Management and Engineering Vaud (HEIG-VD), HES-SO University of Applied Sciences and Arts Western Switzerland , Yverdon-les-Bains 1401, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Management and Engineering Vaud (HEIG-VD), HES-SO University of Applied Sciences and Arts Western Switzerland , Yverdon-les-Bains 1401, Switzerland","institution_ids":["https://openalex.org/I173439891"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031990107","display_name":"Olivier Delaneau","orcid":"https://orcid.org/0000-0002-3906-8446"},"institutions":[{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Olivier Delaneau","raw_affiliation_strings":["Department of Computational Biology, University of Lausanne , Lausanne 1015, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Biology, University of Lausanne , Lausanne 1015, Switzerland","institution_ids":["https://openalex.org/I97565354"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5031990107","https://openalex.org/A5058996303"],"corresponding_institution_ids":["https://openalex.org/I173439891","https://openalex.org/I97565354"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.4237,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.92990793,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"38","issue":"15","first_page":"3778","last_page":"3784"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.517300009727478,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.517300009727478,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.05999999865889549,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.052299998700618744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biobank","display_name":"Biobank","score":0.7725197672843933},{"id":"https://openalex.org/keywords/memory-footprint","display_name":"Memory footprint","score":0.7325056791305542},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7059638500213623},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.624408483505249},{"id":"https://openalex.org/keywords/footprint","display_name":"Footprint","score":0.5208380818367004},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.45680445432662964},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4543130397796631},{"id":"https://openalex.org/keywords/file-size","display_name":"File size","score":0.4299297332763672},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.41860058903694153},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.29958242177963257},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.2801245450973511},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2748643159866333},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.24110755324363708},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2022683322429657},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19584780931472778},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13720345497131348},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08950340747833252}],"concepts":[{"id":"https://openalex.org/C116567970","wikidata":"https://www.wikidata.org/wiki/Q864217","display_name":"Biobank","level":2,"score":0.7725197672843933},{"id":"https://openalex.org/C74912251","wikidata":"https://www.wikidata.org/wiki/Q6815727","display_name":"Memory footprint","level":2,"score":0.7325056791305542},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7059638500213623},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.624408483505249},{"id":"https://openalex.org/C132943942","wikidata":"https://www.wikidata.org/wiki/Q2562511","display_name":"Footprint","level":2,"score":0.5208380818367004},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.45680445432662964},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4543130397796631},{"id":"https://openalex.org/C2776029614","wikidata":"https://www.wikidata.org/wiki/Q1146367","display_name":"File size","level":2,"score":0.4299297332763672},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.41860058903694153},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.29958242177963257},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.2801245450973511},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2748643159866333},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.24110755324363708},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2022683322429657},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19584780931472778},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13720345497131348},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08950340747833252},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018070","descriptor_name":"Biological Specimen Banks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btac413","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac413","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/15/3778/45213127/btac413.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35748697","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35748697","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:serval.unil.ch:BIB_1BC1E292DED4","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_1BC1E292DED4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics, vol. 38, no. 15, pp. 3778-3784","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.unil.ch:iris/107747","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/107747","pdf_url":"https://iris.unil.ch/bitstreams/7bad0c3e-e357-4a70-965f-bbbbeb177d25/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:hesso.tind.io:10706","is_oa":false,"landing_page_url":"http://arodes.hes-so.ch/record/10706","pdf_url":null,"source":{"id":"https://openalex.org/S4306402432","display_name":"ArODES (HES-SO (https://www.hes-so.ch/))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088449","host_organization_name":"HES-SO Gen\u00e8ve","host_organization_lineage":["https://openalex.org/I4210088449"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arodes.hes-so.ch/record/10706","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:9344850","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9344850","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac413","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac413","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/15/3778/45213127/btac413.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.41999998688697815}],"awards":[{"id":"https://openalex.org/G1991107785","display_name":null,"funder_award_id":"PP00P3_176977","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G5850737185","display_name":null,"funder_award_id":"MC_PC_17228","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G699069414","display_name":null,"funder_award_id":"SNSF-PP00P3_176977","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4283447811.pdf","grobid_xml":"https://content.openalex.org/works/W4283447811.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W783262033","https://openalex.org/W2082704080","https://openalex.org/W2099085143","https://openalex.org/W2104549677","https://openalex.org/W2107745473","https://openalex.org/W2147477044","https://openalex.org/W2149992227","https://openalex.org/W2165255717","https://openalex.org/W2263875137","https://openalex.org/W2280860630","https://openalex.org/W2488449982","https://openalex.org/W2511515754","https://openalex.org/W2517876513","https://openalex.org/W2725988230","https://openalex.org/W2789839305","https://openalex.org/W2895486342","https://openalex.org/W2949113050","https://openalex.org/W2971867024","https://openalex.org/W2972226864","https://openalex.org/W2990059271","https://openalex.org/W3003087011","https://openalex.org/W3029661147","https://openalex.org/W3107568262","https://openalex.org/W3126160703","https://openalex.org/W3162800482","https://openalex.org/W3163634484","https://openalex.org/W3216782976","https://openalex.org/W4233928114","https://openalex.org/W6799234409"],"related_works":["https://openalex.org/W2210852504","https://openalex.org/W2371615582","https://openalex.org/W1971087536","https://openalex.org/W2145804432","https://openalex.org/W4239412715","https://openalex.org/W2587020896","https://openalex.org/W2147010729","https://openalex.org/W1981950836","https://openalex.org/W2146547297","https://openalex.org/W115445010"],"abstract_inverted_index":{"MOTIVATION:":[0],"Generation":[1],"of":[2,17,73,101],"genotype":[3],"data":[4,51,141],"has":[5],"been":[6],"growing":[7],"exponentially":[8],"over":[9],"the":[10,14,49,87],"last":[11],"decade.":[12],"With":[13],"large":[15],"size":[16,71],"recent":[18],"datasets":[19],"comes":[20],"a":[21,37,69],"storage":[22,42],"and":[23,52,79,109,123,133],"computational":[24],"burden":[25],"with":[26,40,76,93],"ever":[27],"increasing":[28],"costs.":[29],"To":[30],"reduce":[31],"this":[32,56],"burden,":[33],"we":[34,53],"propose":[35],"XSI,":[36],"file":[38,70,119],"format":[39,120],"reduced":[41],"footprint":[43],"that":[44,64],"also":[45],"allows":[46,67],"computation":[47,108],"on":[48,86],"compressed":[50,77],"show":[54,63],"how":[55],"can":[57],"improve":[58],"future":[59],"analyses.":[60],"RESULTS:":[61],"We":[62],"xSqueezeIt":[65],"(XSI)":[66],"for":[68,83],"reduction":[72],"4-20\u00d7":[74],"compared":[75],"BCF":[78],"demonstrate":[80],"its":[81],"potential":[82],"'compressive":[84],"genomics'":[85],"UK":[88],"Biobank":[89],"whole-genome":[90],"sequencing":[91],"genotypes":[92],"8\u00d7":[94],"faster":[95,99,105,111],"loading":[96],"times,":[97],"5\u00d7":[98],"run":[100],"homozygozity":[102],"computation,":[103],"30\u00d7":[104],"dot":[106],"products":[107],"280\u00d7":[110],"allele":[112],"counts.":[113],"AVAILABILITY":[114],"AND":[115],"IMPLEMENTATION:":[116],"The":[117],"XSI":[118],"specifications,":[121],"API":[122],"command":[124],"line":[125],"tool":[126],"are":[127,134,142],"released":[128],"under":[129],"open-source":[130],"(MIT)":[131],"license":[132],"available":[135,143],"at":[136,144],"https://github.com/rwk-unil/xSqueezeIt.":[137],"SUPPLEMENTARY":[138],"INFORMATION:":[139],"Supplementary":[140],"Bioinformatics":[145],"online.":[146]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
