{"id":"https://openalex.org/W4283456665","doi":"https://doi.org/10.1093/bioinformatics/btac412","title":"EasyGDB: a low-maintenance and highly customizable system to develop genomics portals","display_name":"EasyGDB: a low-maintenance and highly customizable system to develop genomics portals","publication_year":2022,"publication_date":"2022-06-24","ids":{"openalex":"https://openalex.org/W4283456665","doi":"https://doi.org/10.1093/bioinformatics/btac412","pmid":"https://pubmed.ncbi.nlm.nih.gov/35748710"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac412","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac412","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/16/4048/45300893/btac412.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/16/4048/45300893/btac412.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004035700","display_name":"No\u00e9 Fern\u00e1ndez\u2010Pozo","orcid":"https://orcid.org/0000-0002-6489-5566"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I4210137448","display_name":"Instituto de Hortofruticultura Subtropical y Mediterr\u00e1nea \"La Mayora\"","ror":"https://ror.org/04nrv3s86","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210137448","https://openalex.org/I82767444"]}],"countries":["ES","IT"],"is_corresponding":true,"raw_author_name":"Noe Fernandez-Pozo","raw_affiliation_strings":["Departamento de Fruticultura Subtropical y Mediterr\u00e1nea, Instituto de Hortofruticultura Subtropical y Mediterr\u00e1nea La Mayora (IHSM-CSIC-UMA) , M\u00e1laga 29010, Spain","Department of Bioscience, Universita degli Studi di Milano , Milan 20133, Italy"],"raw_orcid":"https://orcid.org/0000-0002-6489-5566","affiliations":[{"raw_affiliation_string":"Departamento de Fruticultura Subtropical y Mediterr\u00e1nea, Instituto de Hortofruticultura Subtropical y Mediterr\u00e1nea La Mayora (IHSM-CSIC-UMA) , M\u00e1laga 29010, Spain","institution_ids":["https://openalex.org/I4210137448"]},{"raw_affiliation_string":"Department of Bioscience, Universita degli Studi di Milano , Milan 20133, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087701636","display_name":"Aureliano Bombarely","orcid":"https://orcid.org/0000-0001-6257-8914"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I4210164699","display_name":"Instituto de Biolog\u00eda Molecular y Celular de Plantas","ror":"https://ror.org/04zdays56","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210164699","https://openalex.org/I60053951"]}],"countries":["ES","IT"],"is_corresponding":false,"raw_author_name":"Aureliano Bombarely","raw_affiliation_strings":["Departamento de Biotecnolog\u00eda y Mejora Vegetal de Especies Cultivadas, Biolog\u00eda Molecular y Celular de Plantas (IBMCP), UPV-CSIC , Valencia 46022, Spain","Department of Bioscience, Universita degli Studi di Milano , Milan 20133, Italy"],"raw_orcid":"https://orcid.org/0000-0001-6257-8914","affiliations":[{"raw_affiliation_string":"Departamento de Biotecnolog\u00eda y Mejora Vegetal de Especies Cultivadas, Biolog\u00eda Molecular y Celular de Plantas (IBMCP), UPV-CSIC , Valencia 46022, Spain","institution_ids":["https://openalex.org/I4210164699"]},{"raw_affiliation_string":"Department of Bioscience, Universita degli Studi di Milano , Milan 20133, Italy","institution_ids":["https://openalex.org/I189158943"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5004035700"],"corresponding_institution_ids":["https://openalex.org/I189158943","https://openalex.org/I4210137448"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.8667,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.7096482,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"38","issue":"16","first_page":"4048","last_page":"4050"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4196000099182129,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4196000099182129,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.0885000005364418,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.06599999964237213,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/json","display_name":"JSON","score":0.7455710172653198},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7421781420707703},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7192521095275879},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.5989746451377869},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5463559627532959},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.5146966576576233},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.5135298371315002},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5102782249450684},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.4370061159133911},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.43540704250335693},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.4283324182033539},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.40693771839141846},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3347098231315613},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.19508561491966248},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19139805436134338},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13815924525260925},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08852788805961609}],"concepts":[{"id":"https://openalex.org/C2780416260","wikidata":"https://www.wikidata.org/wiki/Q2063","display_name":"JSON","level":2,"score":0.7455710172653198},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7421781420707703},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7192521095275879},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.5989746451377869},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5463559627532959},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.5146966576576233},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.5135298371315002},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5102782249450684},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.4370061159133911},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.43540704250335693},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.4283324182033539},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.40693771839141846},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3347098231315613},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.19508561491966248},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19139805436134338},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13815924525260925},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08852788805961609},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btac412","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac412","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/16/4048/45300893/btac412.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35748710","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35748710","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9364376","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9364376","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:digital.csic.es:10261/372713","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/372713","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/acceptedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac412","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac412","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/16/4048/45300893/btac412.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.49000000953674316}],"awards":[{"id":"https://openalex.org/G3706046011","display_name":null,"funder_award_id":"RYC2020-030219-I","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G4999351392","display_name":null,"funder_award_id":"2020-51181-32198","funder_id":"https://openalex.org/F4320332299","funder_display_name":"National Institute of Food and Agriculture"}],"funders":[{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4283456665.pdf","grobid_xml":"https://content.openalex.org/works/W4283456665.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1987916789","https://openalex.org/W2122245399","https://openalex.org/W2577241475","https://openalex.org/W2793054360","https://openalex.org/W2907489510","https://openalex.org/W2987195288","https://openalex.org/W3004458334","https://openalex.org/W3012964617","https://openalex.org/W3124505600","https://openalex.org/W3126872849","https://openalex.org/W3159728495","https://openalex.org/W4210938299"],"related_works":["https://openalex.org/W4389286057","https://openalex.org/W3163912985","https://openalex.org/W2161069068","https://openalex.org/W2942319918","https://openalex.org/W3109437984","https://openalex.org/W2076485048","https://openalex.org/W2152320398","https://openalex.org/W4238306487","https://openalex.org/W2396992196","https://openalex.org/W3034139913"],"abstract_inverted_index":{"SUMMARY:":[0],"EasyGDB":[1,31,78,109,174],"is":[2,110],"an":[3],"easy-to-implement":[4],"low-maintenance":[5],"tool":[6,118,133],"developed":[7],"to":[8,35,90,106,135,155,172],"create":[9],"genomic":[10],"data":[11,80,95],"management":[12],"web":[13,38,148],"platforms.":[14],"It":[15],"can":[16,119,175],"be":[17,120,176],"used":[18],"for":[19,84],"any":[20],"species,":[21,24,46,144],"group":[22],"of":[23,77,139],"or":[25,28,122],"multiple":[26],"genome":[27,58],"annotation":[29,60,65,98],"versions.":[30],"provides":[32],"a":[33,37,111,125,128,146],"framework":[34],"develop":[36],"portal":[39],"that":[40],"includes":[41],"the":[42,137,158],"general":[43],"information":[44],"about":[45],"projects":[47],"and":[48,50,66,69,72,82,92,100,103,117,170],"members,":[49],"bioinformatics":[51,101,153],"tools":[52,154],"such":[53],"as":[54],"file":[55],"downloads,":[56],"BLAST,":[57],"browser,":[59],"search,":[61],"gene":[62,70,97],"expression":[63],"visualization,":[64],"sequence":[67,94],"download,":[68],"ids":[71],"orthologs":[73],"lookup.":[74],"The":[75,168],"code":[76,169],"facilitates":[79],"maintenance":[81],"update":[83],"non-experienced":[85],"bioinformaticians,":[86],"using":[87],"BLAST":[88],"databases":[89],"store":[91],"retrieve":[93],"in":[96,142],"pages":[99],"tools,":[102],"JSON":[104],"files":[105],"customize":[107],"metadata.":[108],"highly":[112],"customizable":[113],"tool.":[114],"Any":[115],"section":[116],"enabled":[121],"disabled":[123],"like":[124],"switch":[126],"through":[127],"single":[129],"configuration":[130],"file.":[131],"This":[132],"aims":[134],"simplify":[136],"development":[138],"genomics":[140,163],"portals":[141],"non-model":[143],"providing":[145],"modern":[147],"style":[149],"with":[150],"embedded":[151],"interactive":[152],"cover":[156],"all":[157],"common":[159],"needs":[160],"derived":[161],"from":[162],"projects.":[164],"AVAILABILITY":[165],"AND":[166],"IMPLEMENTATION:":[167],"manual":[171],"use":[173],"found":[177],"at":[178],"https://github.com/noefp/easy_gdb.":[179]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4}],"updated_date":"2026-05-07T13:39:58.223016","created_date":"2025-10-10T00:00:00"}
