{"id":"https://openalex.org/W4283159436","doi":"https://doi.org/10.1093/bioinformatics/btac399","title":"A rarefaction-without-resampling extension of PERMANOVA for testing presence\u2013absence associations in the microbiome","display_name":"A rarefaction-without-resampling extension of PERMANOVA for testing presence\u2013absence associations in the microbiome","publication_year":2022,"publication_date":"2022-06-20","ids":{"openalex":"https://openalex.org/W4283159436","doi":"https://doi.org/10.1093/bioinformatics/btac399","pmid":"https://pubmed.ncbi.nlm.nih.gov/35723568"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac399","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac399","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9991891","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038724451","display_name":"Yi\u2010Juan Hu","orcid":"https://orcid.org/0000-0003-2171-9041"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yi-Juan Hu","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Emory University , Atlanta, GA 30322, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Emory University , Atlanta, GA 30322, USA","institution_ids":["https://openalex.org/I150468666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080945172","display_name":"Glen A. Satten","orcid":"https://orcid.org/0000-0001-7275-5371"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Glen A Satten","raw_affiliation_strings":["Department of Gynecology and Obstetrics, Emory University School of Medicine , Atlanta, GA 30322, USA"],"affiliations":[{"raw_affiliation_string":"Department of Gynecology and Obstetrics, Emory University School of Medicine , Atlanta, GA 30322, USA","institution_ids":["https://openalex.org/I150468666"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5038724451"],"corresponding_institution_ids":["https://openalex.org/I150468666"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3887,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.80533915,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"38","issue":"15","first_page":"3689","last_page":"3697"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10866","display_name":"Nutritional Studies and Diet","score":0.9567999839782715,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unifrac","display_name":"UniFrac","score":0.8385258913040161},{"id":"https://openalex.org/keywords/jaccard-index","display_name":"Jaccard index","score":0.7979608774185181},{"id":"https://openalex.org/keywords/resampling","display_name":"Resampling","score":0.7969776391983032},{"id":"https://openalex.org/keywords/overdispersion","display_name":"Overdispersion","score":0.6565582752227783},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.6404349207878113},{"id":"https://openalex.org/keywords/covariate","display_name":"Covariate","score":0.6089449524879456},{"id":"https://openalex.org/keywords/rarefaction","display_name":"Rarefaction (ecology)","score":0.49232614040374756},{"id":"https://openalex.org/keywords/confounding","display_name":"Confounding","score":0.4914602041244507},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.4739147424697876},{"id":"https://openalex.org/keywords/distance-matrix","display_name":"Distance matrix","score":0.4685329496860504},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36194491386413574},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3593946695327759},{"id":"https://openalex.org/keywords/count-data","display_name":"Count data","score":0.24729874730110168},{"id":"https://openalex.org/keywords/poisson-distribution","display_name":"Poisson distribution","score":0.21673676371574402},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.20964518189430237},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.20249122381210327},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.1774706244468689}],"concepts":[{"id":"https://openalex.org/C151437367","wikidata":"https://www.wikidata.org/wiki/Q7884646","display_name":"UniFrac","level":4,"score":0.8385258913040161},{"id":"https://openalex.org/C203519979","wikidata":"https://www.wikidata.org/wiki/Q865360","display_name":"Jaccard index","level":3,"score":0.7979608774185181},{"id":"https://openalex.org/C150921843","wikidata":"https://www.wikidata.org/wiki/Q1170431","display_name":"Resampling","level":2,"score":0.7969776391983032},{"id":"https://openalex.org/C117236510","wikidata":"https://www.wikidata.org/wiki/Q7113620","display_name":"Overdispersion","level":4,"score":0.6565582752227783},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.6404349207878113},{"id":"https://openalex.org/C119043178","wikidata":"https://www.wikidata.org/wiki/Q320723","display_name":"Covariate","level":2,"score":0.6089449524879456},{"id":"https://openalex.org/C132705693","wikidata":"https://www.wikidata.org/wiki/Q7294543","display_name":"Rarefaction (ecology)","level":3,"score":0.49232614040374756},{"id":"https://openalex.org/C77350462","wikidata":"https://www.wikidata.org/wiki/Q1125472","display_name":"Confounding","level":2,"score":0.4914602041244507},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4739147424697876},{"id":"https://openalex.org/C111208986","wikidata":"https://www.wikidata.org/wiki/Q901698","display_name":"Distance matrix","level":2,"score":0.4685329496860504},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36194491386413574},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3593946695327759},{"id":"https://openalex.org/C33643355","wikidata":"https://www.wikidata.org/wiki/Q5176731","display_name":"Count data","level":3,"score":0.24729874730110168},{"id":"https://openalex.org/C100906024","wikidata":"https://www.wikidata.org/wiki/Q205692","display_name":"Poisson distribution","level":2,"score":0.21673676371574402},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.20964518189430237},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.20249122381210327},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.1774706244468689},{"id":"https://openalex.org/C42062724","wikidata":"https://www.wikidata.org/wiki/Q1209205","display_name":"16S ribosomal RNA","level":3,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0},{"id":"https://openalex.org/C62648534","wikidata":"https://www.wikidata.org/wiki/Q706937","display_name":"Species diversity","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015723","descriptor_name":"Gene Library","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac399","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac399","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35723568","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35723568","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9991891","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9991891","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:9991891","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9991891","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W30236741","https://openalex.org/W1516274582","https://openalex.org/W1563636823","https://openalex.org/W1564554007","https://openalex.org/W1968632832","https://openalex.org/W2004014148","https://openalex.org/W2028912684","https://openalex.org/W2037878492","https://openalex.org/W2052357007","https://openalex.org/W2063276097","https://openalex.org/W2085284704","https://openalex.org/W2088170171","https://openalex.org/W2145664556","https://openalex.org/W2149421543","https://openalex.org/W2170024099","https://openalex.org/W2403573949","https://openalex.org/W2553548418","https://openalex.org/W2592244930","https://openalex.org/W2749493208","https://openalex.org/W2784198355","https://openalex.org/W2787902098","https://openalex.org/W2806343584","https://openalex.org/W2810934340","https://openalex.org/W2896481903","https://openalex.org/W2899898927","https://openalex.org/W2903174799","https://openalex.org/W2916333851","https://openalex.org/W2938016054","https://openalex.org/W2945390479","https://openalex.org/W2949667594","https://openalex.org/W2951604654","https://openalex.org/W2951922744","https://openalex.org/W2952463830","https://openalex.org/W2953560282","https://openalex.org/W2963276645","https://openalex.org/W3007623701","https://openalex.org/W3017169614","https://openalex.org/W3125798678","https://openalex.org/W3139007161","https://openalex.org/W3144311771","https://openalex.org/W3162492442","https://openalex.org/W3212450750","https://openalex.org/W4205366374","https://openalex.org/W4220780573","https://openalex.org/W6751357168","https://openalex.org/W6761049788","https://openalex.org/W6792871909"],"related_works":["https://openalex.org/W4254879869","https://openalex.org/W3022576529","https://openalex.org/W2628526247","https://openalex.org/W2596401011","https://openalex.org/W2913569734","https://openalex.org/W4401519790","https://openalex.org/W2702570413","https://openalex.org/W3191349168","https://openalex.org/W4213427769","https://openalex.org/W123196115"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
