{"id":"https://openalex.org/W4282824315","doi":"https://doi.org/10.1093/bioinformatics/btac390","title":"hapCon: estimating contamination of ancient genomes by copying from reference haplotypes","display_name":"hapCon: estimating contamination of ancient genomes by copying from reference haplotypes","publication_year":2022,"publication_date":"2022-06-13","ids":{"openalex":"https://openalex.org/W4282824315","doi":"https://doi.org/10.1093/bioinformatics/btac390","pmid":"https://pubmed.ncbi.nlm.nih.gov/35695771"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac390","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac390","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/15/3768/45213289/btac390.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/15/3768/45213289/btac390.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003092409","display_name":"Yilei Huang","orcid":"https://orcid.org/0000-0002-2860-2543"},"institutions":[{"id":"https://openalex.org/I4210118560","display_name":"Max Planck Institute for Evolutionary Anthropology","ror":"https://ror.org/02a33b393","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210118560"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Yilei Huang","raw_affiliation_strings":["Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology , 04103 Leipzig, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology , 04103 Leipzig, Germany","institution_ids":["https://openalex.org/I4210118560"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018500128","display_name":"Harald Ringbauer","orcid":"https://orcid.org/0000-0002-4884-9682"},"institutions":[{"id":"https://openalex.org/I4210118560","display_name":"Max Planck Institute for Evolutionary Anthropology","ror":"https://ror.org/02a33b393","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210118560"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Harald Ringbauer","raw_affiliation_strings":["Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology , 04103 Leipzig, Germany"],"affiliations":[{"raw_affiliation_string":"Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology , 04103 Leipzig, Germany","institution_ids":["https://openalex.org/I4210118560"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5003092409","https://openalex.org/A5018500128"],"corresponding_institution_ids":["https://openalex.org/I4210118560"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.423,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.96196597,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"38","issue":"15","first_page":"3768","last_page":"3777"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/contamination","display_name":"Contamination","score":0.8190988302230835},{"id":"https://openalex.org/keywords/ancient-dna","display_name":"Ancient DNA","score":0.7860968112945557},{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.5426907539367676},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4798390567302704},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.45807406306266785},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3617958128452301},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3383450210094452},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.32232099771499634},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.13298150897026062},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10631531476974487},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.10341611504554749}],"concepts":[{"id":"https://openalex.org/C112570922","wikidata":"https://www.wikidata.org/wiki/Q60528603","display_name":"Contamination","level":2,"score":0.8190988302230835},{"id":"https://openalex.org/C189338579","wikidata":"https://www.wikidata.org/wiki/Q290447","display_name":"Ancient DNA","level":3,"score":0.7860968112945557},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.5426907539367676},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4798390567302704},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.45807406306266785},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3617958128452301},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3383450210094452},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32232099771499634},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.13298150897026062},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10631531476974487},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.10341611504554749},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000072441","descriptor_name":"DNA, Ancient","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072441","descriptor_name":"DNA, Ancient","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072441","descriptor_name":"DNA, Ancient","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac390","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac390","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/15/3768/45213289/btac390.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35695771","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35695771","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9344841","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9344841","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac390","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac390","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/15/3768/45213289/btac390.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4282824315.pdf","grobid_xml":"https://content.openalex.org/works/W4282824315.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1437671111","https://openalex.org/W1506806321","https://openalex.org/W1962960380","https://openalex.org/W1975749505","https://openalex.org/W2000359198","https://openalex.org/W2005126631","https://openalex.org/W2050876420","https://openalex.org/W2050967443","https://openalex.org/W2058401000","https://openalex.org/W2070821333","https://openalex.org/W2099595226","https://openalex.org/W2104549677","https://openalex.org/W2108234281","https://openalex.org/W2112954194","https://openalex.org/W2150131459","https://openalex.org/W2174080403","https://openalex.org/W2177180777","https://openalex.org/W2344660378","https://openalex.org/W2522993044","https://openalex.org/W2529241974","https://openalex.org/W2763512053","https://openalex.org/W2800301384","https://openalex.org/W2888599454","https://openalex.org/W2891043053","https://openalex.org/W2899751111","https://openalex.org/W2922043930","https://openalex.org/W2950808984","https://openalex.org/W2970150218","https://openalex.org/W2990059271","https://openalex.org/W3003257820","https://openalex.org/W3007579206","https://openalex.org/W3047734251","https://openalex.org/W3084979525","https://openalex.org/W3095727366","https://openalex.org/W3097237895","https://openalex.org/W3103145119","https://openalex.org/W3116245514","https://openalex.org/W3120295425","https://openalex.org/W3197367468","https://openalex.org/W3199784335","https://openalex.org/W4226172793","https://openalex.org/W4229452433"],"related_works":["https://openalex.org/W3146762847","https://openalex.org/W2398263405","https://openalex.org/W4246525302","https://openalex.org/W2056886854","https://openalex.org/W2025446304","https://openalex.org/W2355749553","https://openalex.org/W2166354960","https://openalex.org/W2327028314","https://openalex.org/W2131321814","https://openalex.org/W1888102361"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":7}],"updated_date":"2026-03-28T08:17:26.163206","created_date":"2025-10-10T00:00:00"}