{"id":"https://openalex.org/W4282935889","doi":"https://doi.org/10.1093/bioinformatics/btac380","title":"Prediction of allosteric communication pathways in proteins","display_name":"Prediction of allosteric communication pathways in proteins","publication_year":2022,"publication_date":"2022-06-08","ids":{"openalex":"https://openalex.org/W4282935889","doi":"https://doi.org/10.1093/bioinformatics/btac380","pmid":"https://pubmed.ncbi.nlm.nih.gov/35674396"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac380","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac380","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/14/3590/49884259/btac380.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/14/3590/49884259/btac380.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038256975","display_name":"T\u00fcrkan Halilo\u01e7lu","orcid":"https://orcid.org/0000-0002-1279-5803"},"institutions":[{"id":"https://openalex.org/I4405392","display_name":"Bo\u011fazi\u00e7i University","ror":"https://ror.org/03z9tma90","country_code":"TR","type":"education","lineage":["https://openalex.org/I4405392"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Turkan Haliloglu","raw_affiliation_strings":["Polymer Research Center and Chemical Engineering Department, Bogazici University , \u0130stanbul 34342, Turkey"],"affiliations":[{"raw_affiliation_string":"Polymer Research Center and Chemical Engineering Department, Bogazici University , \u0130stanbul 34342, Turkey","institution_ids":["https://openalex.org/I4405392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006971050","display_name":"Aysima Hacisuleyman","orcid":"https://orcid.org/0000-0003-2471-0296"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Aysima Hacisuleyman","raw_affiliation_strings":["Institute of Bioengineering, Swiss Federal Institute of Technology (EPFL) , Lausanne 1015, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Bioengineering, Swiss Federal Institute of Technology (EPFL) , Lausanne 1015, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038786006","display_name":"Burak Erman","orcid":"https://orcid.org/0000-0002-2496-6059"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Burak Erman","raw_affiliation_strings":["Department of Chemical and Biological Engineering, Koc University , \u0130stanbul 34450, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biological Engineering, Koc University , \u0130stanbul 34450, Turkey","institution_ids":["https://openalex.org/I1351752"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5038256975","https://openalex.org/A5038786006"],"corresponding_institution_ids":["https://openalex.org/I1351752","https://openalex.org/I4405392"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.4876,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.90209972,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"38","issue":"14","first_page":"3590","last_page":"3599"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/allosteric-regulation","display_name":"Allosteric regulation","score":0.9242196083068848},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4942617416381836},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4741898477077484},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25508588552474976},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1872258186340332},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.07794630527496338}],"concepts":[{"id":"https://openalex.org/C166342909","wikidata":"https://www.wikidata.org/wiki/Q845326","display_name":"Allosteric regulation","level":3,"score":0.9242196083068848},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4942617416381836},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4741898477077484},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25508588552474976},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1872258186340332},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.07794630527496338}],"mesh":[{"descriptor_ui":"D000494","descriptor_name":"Allosteric Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000494","descriptor_name":"Allosteric Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000494","descriptor_name":"Allosteric Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000495","descriptor_name":"Allosteric Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000495","descriptor_name":"Allosteric Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000495","descriptor_name":"Allosteric Site","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003142","descriptor_name":"Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003142","descriptor_name":"Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003142","descriptor_name":"Communication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btac380","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac380","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/14/3590/49884259/btac380.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35674396","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35674396","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac380","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac380","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/14/3590/49884259/btac380.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4282935889.pdf","grobid_xml":"https://content.openalex.org/works/W4282935889.grobid-xml"},"referenced_works_count":105,"referenced_works":["https://openalex.org/W641642508","https://openalex.org/W1500927176","https://openalex.org/W1520416422","https://openalex.org/W1526436408","https://openalex.org/W1896347914","https://openalex.org/W1964543134","https://openalex.org/W1972964958","https://openalex.org/W1973433543","https://openalex.org/W1974349185","https://openalex.org/W1982822649","https://openalex.org/W1986795645","https://openalex.org/W1987774535","https://openalex.org/W1990460499","https://openalex.org/W1995875735","https://openalex.org/W1998093640","https://openalex.org/W2003667906","https://openalex.org/W2005392755","https://openalex.org/W2009123297","https://openalex.org/W2010384662","https://openalex.org/W2013726100","https://openalex.org/W2015117663","https://openalex.org/W2016384179","https://openalex.org/W2017428798","https://openalex.org/W2018262140","https://openalex.org/W2022821237","https://openalex.org/W2023590125","https://openalex.org/W2029118067","https://openalex.org/W2033915366","https://openalex.org/W2043281738","https://openalex.org/W2043383780","https://openalex.org/W2044442377","https://openalex.org/W2046002103","https://openalex.org/W2046385005","https://openalex.org/W2047206811","https://openalex.org/W2049598343","https://openalex.org/W2052504582","https://openalex.org/W2058781018","https://openalex.org/W2063530729","https://openalex.org/W2065081590","https://openalex.org/W2069159000","https://openalex.org/W2069777230","https://openalex.org/W2071822724","https://openalex.org/W2074129172","https://openalex.org/W2083975423","https://openalex.org/W2085110003","https://openalex.org/W2085641569","https://openalex.org/W2092006899","https://openalex.org/W2094295896","https://openalex.org/W2095420958","https://openalex.org/W2101017457","https://openalex.org/W2106208748","https://openalex.org/W2107234652","https://openalex.org/W2108700551","https://openalex.org/W2110810762","https://openalex.org/W2112600835","https://openalex.org/W2112907786","https://openalex.org/W2113994268","https://openalex.org/W2115152262","https://openalex.org/W2125599365","https://openalex.org/W2134742468","https://openalex.org/W2143047148","https://openalex.org/W2151855710","https://openalex.org/W2151971205","https://openalex.org/W2153983403","https://openalex.org/W2154030500","https://openalex.org/W2155812479","https://openalex.org/W2160903751","https://openalex.org/W2165777467","https://openalex.org/W2168798454","https://openalex.org/W2260312731","https://openalex.org/W2301716143","https://openalex.org/W2309999161","https://openalex.org/W2330256475","https://openalex.org/W2359094391","https://openalex.org/W2413568519","https://openalex.org/W2414667422","https://openalex.org/W2472466887","https://openalex.org/W2495252094","https://openalex.org/W2577946788","https://openalex.org/W2591912476","https://openalex.org/W2594475116","https://openalex.org/W2717068414","https://openalex.org/W2751446368","https://openalex.org/W2802339254","https://openalex.org/W2883220091","https://openalex.org/W2885134480","https://openalex.org/W2886463620","https://openalex.org/W2905107300","https://openalex.org/W2930584012","https://openalex.org/W2951948435","https://openalex.org/W3011069705","https://openalex.org/W3017238723","https://openalex.org/W3022020637","https://openalex.org/W3034009090","https://openalex.org/W3035324832","https://openalex.org/W3046878556","https://openalex.org/W3049296654","https://openalex.org/W3123404511","https://openalex.org/W3138804135","https://openalex.org/W3158504321","https://openalex.org/W3169913254","https://openalex.org/W3182702903","https://openalex.org/W3185257695","https://openalex.org/W4230225009","https://openalex.org/W6782028025"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2046450796","https://openalex.org/W2939998722","https://openalex.org/W2169750653","https://openalex.org/W2195592873","https://openalex.org/W1971782741","https://openalex.org/W3005062988","https://openalex.org/W2075777827","https://openalex.org/W4211217675","https://openalex.org/W2911329269"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
