{"id":"https://openalex.org/W4282927608","doi":"https://doi.org/10.1093/bioinformatics/btac371","title":"CNpare: matching DNA copy number profiles","display_name":"CNpare: matching DNA copy number profiles","publication_year":2022,"publication_date":"2022-05-31","ids":{"openalex":"https://openalex.org/W4282927608","doi":"https://doi.org/10.1093/bioinformatics/btac371","pmid":"https://pubmed.ncbi.nlm.nih.gov/35640971"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac371","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac371","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/14/3638/44858485/btac371.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/14/3638/44858485/btac371.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065258686","display_name":"Blas Chaves-Urbano","orcid":"https://orcid.org/0000-0003-3879-454X"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Blas Chaves-Urbano","raw_affiliation_strings":["Computational Oncology Group, Spanish National Cancer Research Centre (CNIO) , 28029 Madrid, Spain"],"raw_orcid":"https://orcid.org/0000-0003-3879-454X","affiliations":[{"raw_affiliation_string":"Computational Oncology Group, Spanish National Cancer Research Centre (CNIO) , 28029 Madrid, Spain","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016188907","display_name":"B\u00e1rbara Hernando","orcid":"https://orcid.org/0000-0003-4019-2732"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Barbara Hernando","raw_affiliation_strings":["Computational Oncology Group, Spanish National Cancer Research Centre (CNIO) , 28029 Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Oncology Group, Spanish National Cancer Research Centre (CNIO) , 28029 Madrid, Spain","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100703950","display_name":"Mar\u00eda J. Garc\u00eda","orcid":"https://orcid.org/0000-0002-2236-9912"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Maria J Garcia","raw_affiliation_strings":["Computational Oncology Group, Spanish National Cancer Research Centre (CNIO) , 28029 Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Oncology Group, Spanish National Cancer Research Centre (CNIO) , 28029 Madrid, Spain","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048069780","display_name":"Geoff Macintyre","orcid":"https://orcid.org/0000-0003-3906-467X"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Geoff Macintyre","raw_affiliation_strings":["Computational Oncology Group, Spanish National Cancer Research Centre (CNIO) , 28029 Madrid, Spain"],"raw_orcid":"https://orcid.org/0000-0003-3906-467X","affiliations":[{"raw_affiliation_string":"Computational Oncology Group, Spanish National Cancer Research Centre (CNIO) , 28029 Madrid, Spain","institution_ids":["https://openalex.org/I4210089594"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5048069780"],"corresponding_institution_ids":["https://openalex.org/I4210089594"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.3852,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.54088626,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"38","issue":"14","first_page":"3638","last_page":"3641"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7140147686004639},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.6271703839302063},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5598040819168091},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5437418818473816},{"id":"https://openalex.org/keywords/cancer-cell-lines","display_name":"Cancer cell lines","score":0.4620340168476105},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.45768773555755615},{"id":"https://openalex.org/keywords/line","display_name":"Line (geometry)","score":0.44941577315330505},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43965691328048706},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.41861802339553833},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2347342073917389},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2312713861465454},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1973782479763031},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.13739484548568726},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08947914838790894},{"id":"https://openalex.org/keywords/cancer-cell","display_name":"Cancer cell","score":0.08138218522071838},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.072355717420578},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.0660855770111084}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7140147686004639},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.6271703839302063},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5598040819168091},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5437418818473816},{"id":"https://openalex.org/C2994372470","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell lines","level":4,"score":0.4620340168476105},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.45768773555755615},{"id":"https://openalex.org/C198352243","wikidata":"https://www.wikidata.org/wiki/Q37105","display_name":"Line (geometry)","level":2,"score":0.44941577315330505},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43965691328048706},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.41861802339553833},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2347342073917389},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2312713861465454},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1973782479763031},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.13739484548568726},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08947914838790894},{"id":"https://openalex.org/C96232424","wikidata":"https://www.wikidata.org/wiki/Q4118072","display_name":"Cancer cell","level":3,"score":0.08138218522071838},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.072355717420578},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0660855770111084},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btac371","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac371","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/14/3638/44858485/btac371.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35640971","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35640971","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/414735","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/414735","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:9272807","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9272807","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac371","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac371","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/14/3638/44858485/btac371.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4493705816","display_name":null,"funder_award_id":"PID2019-111356RA-I00","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G7186414377","display_name":null,"funder_award_id":"MCIN/AEI/10.13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1889405671","https://openalex.org/W1997338647","https://openalex.org/W2006288875","https://openalex.org/W2026548544","https://openalex.org/W2035233056","https://openalex.org/W2088735033","https://openalex.org/W2108068107","https://openalex.org/W2527545321","https://openalex.org/W2799444748","https://openalex.org/W2886855629","https://openalex.org/W2913196556","https://openalex.org/W2944727022","https://openalex.org/W2953270703","https://openalex.org/W2965821518","https://openalex.org/W3028182697","https://openalex.org/W3039012272","https://openalex.org/W3119242039","https://openalex.org/W3158981225","https://openalex.org/W3175939284","https://openalex.org/W6727637132"],"related_works":["https://openalex.org/W2086525401","https://openalex.org/W1972035260","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W2053325634","https://openalex.org/W3178279768","https://openalex.org/W193851735","https://openalex.org/W2888097224","https://openalex.org/W2773861473","https://openalex.org/W3081644756"],"abstract_inverted_index":{"SUMMARY:":[0],"Selecting":[1],"the":[2,14,51,57],"optimal":[3],"cancer":[4],"cell":[5,26],"line":[6,27],"for":[7],"an":[8,42],"experiment":[9],"can":[10,53],"be":[11,54],"challenging":[12],"given":[13],"diversity":[15],"of":[16],"lines":[17],"available.":[18],"Here,":[19],"we":[20],"present":[21],"CNpare,":[22],"which":[23],"identifies":[24],"similar":[25],"models":[28],"based":[29],"on":[30],"genome-wide":[31],"DNA":[32],"copy":[33],"number.":[34],"AVAILABILITY":[35],"AND":[36],"IMPLEMENTATION:":[37],"CNpare":[38],"is":[39],"available":[40,67],"as":[41],"R":[43],"package":[44],"at":[45,60,68],"https://github.com/macintyrelab/CNpare.":[46],"All":[47],"analysis":[48],"performed":[49],"in":[50],"manuscript":[52],"reproduced":[55],"via":[56],"code":[58],"found":[59],"https://github.com/macintyrelab/CNpare_analyses.":[61],"SUPPLEMENTARY":[62],"INFORMATION:":[63],"Supplementary":[64],"data":[65],"are":[66],"Bioinformatics":[69],"online.":[70]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
