{"id":"https://openalex.org/W4282913052","doi":"https://doi.org/10.1093/bioinformatics/btac356","title":"An automated multi-modal graph-based pipeline for mouse genetic discovery","display_name":"An automated multi-modal graph-based pipeline for mouse genetic discovery","publication_year":2022,"publication_date":"2022-05-24","ids":{"openalex":"https://openalex.org/W4282913052","doi":"https://doi.org/10.1093/bioinformatics/btac356","pmid":"https://pubmed.ncbi.nlm.nih.gov/35608290"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac356","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac356","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3385/49884240/btac356.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3385/49884240/btac356.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045717560","display_name":"Zhuoqing Fang","orcid":"https://orcid.org/0000-0002-7418-1313"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Zhuoqing Fang","raw_affiliation_strings":["Department of Anesthesia, Pain and Perioperative Medicine, Stanford University School of Medicine , Stanford, CA 94305, USA"],"affiliations":[{"raw_affiliation_string":"Department of Anesthesia, Pain and Perioperative Medicine, Stanford University School of Medicine , Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016419819","display_name":"Gary Peltz","orcid":"https://orcid.org/0000-0001-6191-7697"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gary Peltz","raw_affiliation_strings":["Department of Anesthesia, Pain and Perioperative Medicine, Stanford University School of Medicine , Stanford, CA 94305, USA"],"affiliations":[{"raw_affiliation_string":"Department of Anesthesia, Pain and Perioperative Medicine, Stanford University School of Medicine , Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5045717560"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.5147,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.60799229,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"38","issue":"13","first_page":"3385","last_page":"3394"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11457","display_name":"Adipose Tissue and Metabolism","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5341756343841553},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5267345905303955},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5028731226921082},{"id":"https://openalex.org/keywords/genetic-architecture","display_name":"Genetic architecture","score":0.4669766426086426},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4479946494102478},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.4140196144580841},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3561820089817047},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3461725413799286},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3458878993988037},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3256101608276367},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.293069064617157}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5341756343841553},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5267345905303955},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5028731226921082},{"id":"https://openalex.org/C9287583","wikidata":"https://www.wikidata.org/wiki/Q5532883","display_name":"Genetic architecture","level":4,"score":0.4669766426086426},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4479946494102478},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.4140196144580841},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3561820089817047},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3461725413799286},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3458878993988037},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3256101608276367},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.293069064617157},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009765","descriptor_name":"Obesity","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac356","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac356","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3385/49884240/btac356.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35608290","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35608290","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9992076","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9992076","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac356","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac356","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3385/49884240/btac356.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4282913052.pdf","grobid_xml":"https://content.openalex.org/works/W4282913052.grobid-xml"},"referenced_works_count":80,"referenced_works":["https://openalex.org/W63008016","https://openalex.org/W1917519329","https://openalex.org/W1964653347","https://openalex.org/W1975302052","https://openalex.org/W1985272560","https://openalex.org/W1988486848","https://openalex.org/W1988634590","https://openalex.org/W1991189546","https://openalex.org/W1993384327","https://openalex.org/W2002556513","https://openalex.org/W2009330034","https://openalex.org/W2033151532","https://openalex.org/W2041093448","https://openalex.org/W2041136224","https://openalex.org/W2041731718","https://openalex.org/W2043723116","https://openalex.org/W2044050933","https://openalex.org/W2071797996","https://openalex.org/W2078524200","https://openalex.org/W2086794706","https://openalex.org/W2093800333","https://openalex.org/W2096525273","https://openalex.org/W2100013324","https://openalex.org/W2101062898","https://openalex.org/W2103738634","https://openalex.org/W2104910525","https://openalex.org/W2107811029","https://openalex.org/W2119279196","https://openalex.org/W2134838671","https://openalex.org/W2139969213","https://openalex.org/W2155055267","https://openalex.org/W2161633633","https://openalex.org/W2163082292","https://openalex.org/W2171135911","https://openalex.org/W2300791493","https://openalex.org/W2336431486","https://openalex.org/W2484239316","https://openalex.org/W2512573865","https://openalex.org/W2535426958","https://openalex.org/W2551131534","https://openalex.org/W2554019130","https://openalex.org/W2588431354","https://openalex.org/W2589937067","https://openalex.org/W2595097874","https://openalex.org/W2751686252","https://openalex.org/W2760742318","https://openalex.org/W2762321532","https://openalex.org/W2770299445","https://openalex.org/W2786016794","https://openalex.org/W2801470635","https://openalex.org/W2919749708","https://openalex.org/W2945257483","https://openalex.org/W2948558658","https://openalex.org/W2951364430","https://openalex.org/W2955231772","https://openalex.org/W2970910367","https://openalex.org/W2975979350","https://openalex.org/W2980789587","https://openalex.org/W3002946530","https://openalex.org/W3007815550","https://openalex.org/W3033896008","https://openalex.org/W3042221936","https://openalex.org/W3082125270","https://openalex.org/W3129519282","https://openalex.org/W3137067885","https://openalex.org/W3138225633","https://openalex.org/W3159925822","https://openalex.org/W3188579603","https://openalex.org/W3193447048","https://openalex.org/W3199164850","https://openalex.org/W3200707343","https://openalex.org/W3205076722","https://openalex.org/W3208470314","https://openalex.org/W3212346081","https://openalex.org/W4210706440","https://openalex.org/W4210755447","https://openalex.org/W4220680585","https://openalex.org/W4247001379","https://openalex.org/W6790937709","https://openalex.org/W7075679540"],"related_works":["https://openalex.org/W2185116869","https://openalex.org/W2500422215","https://openalex.org/W4388247775","https://openalex.org/W2951758386","https://openalex.org/W4220800656","https://openalex.org/W3037187668","https://openalex.org/W3084594830","https://openalex.org/W2774504697","https://openalex.org/W1988072872","https://openalex.org/W2794316143"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
