{"id":"https://openalex.org/W3152620848","doi":"https://doi.org/10.1093/bioinformatics/btac343","title":"Transcriptome-wide prediction of prostate cancer gene expression from histopathology images using co-expression-based convolutional neural networks","display_name":"Transcriptome-wide prediction of prostate cancer gene expression from histopathology images using co-expression-based convolutional neural networks","publication_year":2022,"publication_date":"2022-05-20","ids":{"openalex":"https://openalex.org/W3152620848","doi":"https://doi.org/10.1093/bioinformatics/btac343","mag":"3152620848","pmid":"https://pubmed.ncbi.nlm.nih.gov/35595235"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac343","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac343","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3462/44268760/btac343.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3462/44268760/btac343.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016797809","display_name":"Philippe Weitz","orcid":"https://orcid.org/0000-0002-1788-0716"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Philippe Weitz","raw_affiliation_strings":["Department of Medical Epidemiology and Biostatistics, Karolinska Institutet , 17177 Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Medical Epidemiology and Biostatistics, Karolinska Institutet , 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047152154","display_name":"Yinxi Wang","orcid":"https://orcid.org/0000-0002-1651-7763"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Yinxi Wang","raw_affiliation_strings":["Department of Medical Epidemiology and Biostatistics, Karolinska Institutet , 17177 Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Medical Epidemiology and Biostatistics, Karolinska Institutet , 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069504905","display_name":"Kimmo Kartasalo","orcid":"https://orcid.org/0000-0002-9470-4783"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["FI","SE"],"is_corresponding":false,"raw_author_name":"Kimmo Kartasalo","raw_affiliation_strings":["Department of Medical Epidemiology and Biostatistics, Karolinska Institutet , 17177 Stockholm, Sweden","Faculty of Medicine and Health Technology, Tampere University , 33100 Tampere, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Medical Epidemiology and Biostatistics, Karolinska Institutet , 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"Faculty of Medicine and Health Technology, Tampere University , 33100 Tampere, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080563805","display_name":"Lars Egevad","orcid":"https://orcid.org/0000-0001-8531-222X"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Lars Egevad","raw_affiliation_strings":["Department of Oncology and Pathology, Karolinska Institutet , 17177 Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Oncology and Pathology, Karolinska Institutet , 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031466516","display_name":"Johan Lindberg","orcid":"https://orcid.org/0000-0003-3610-6774"},"institutions":[{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Johan Lindberg","raw_affiliation_strings":["Department of Medical Epidemiology and Biostatistics, Karolinska Institutet , 17177 Stockholm, Sweden","Science for Life Laboratory , 17177 Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Medical Epidemiology and Biostatistics, Karolinska Institutet , 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"Science for Life Laboratory , 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I2800139495"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021982213","display_name":"Henrik Gr\u00f6nberg","orcid":"https://orcid.org/0000-0002-1073-2753"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Henrik Gr\u00f6nberg","raw_affiliation_strings":["Department of Medical Epidemiology and Biostatistics, Karolinska Institutet , 17177 Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Medical Epidemiology and Biostatistics, Karolinska Institutet , 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073429275","display_name":"Martin Eklund","orcid":"https://orcid.org/0000-0001-5032-5266"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Martin Eklund","raw_affiliation_strings":["Department of Medical Epidemiology and Biostatistics, Karolinska Institutet , 17177 Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Medical Epidemiology and Biostatistics, Karolinska Institutet , 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046937219","display_name":"Mattias Rantalainen","orcid":"https://orcid.org/0000-0002-7740-2986"},"institutions":[{"id":"https://openalex.org/I1335113835","display_name":"Karolinska University Hospital","ror":"https://ror.org/00m8d6786","country_code":"SE","type":"healthcare","lineage":["https://openalex.org/I1335113835"]},{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]}],"countries":["SE"],"is_corresponding":true,"raw_author_name":"Mattias Rantalainen","raw_affiliation_strings":["Department of Medical Epidemiology and Biostatistics, Karolinska Institutet , 17177 Stockholm, Sweden","MedTechLabs, BioClinicum, Karolinska University Hospital , 17176 Stockholm, Sweden"],"affiliations":[{"raw_affiliation_string":"Department of Medical Epidemiology and Biostatistics, Karolinska Institutet , 17177 Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"MedTechLabs, BioClinicum, Karolinska University Hospital , 17176 Stockholm, Sweden","institution_ids":["https://openalex.org/I1335113835"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5046937219"],"corresponding_institution_ids":["https://openalex.org/I1335113835","https://openalex.org/I28166907"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.5879,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.93495948,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"38","issue":"13","first_page":"3462","last_page":"3469"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.8742740750312805},{"id":"https://openalex.org/keywords/prostate-cancer","display_name":"Prostate cancer","score":0.6361410021781921},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.6340988874435425},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5706285834312439},{"id":"https://openalex.org/keywords/histopathology","display_name":"Histopathology","score":0.5085386037826538},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4707527756690979},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4289761185646057},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.4195171892642975},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4106593430042267},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.36683690547943115},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3548966944217682},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.33925724029541016},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.2717481851577759},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22356194257736206},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17542797327041626},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1626545488834381},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08594229817390442}],"concepts":[{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.8742740750312805},{"id":"https://openalex.org/C2780192828","wikidata":"https://www.wikidata.org/wiki/Q181257","display_name":"Prostate cancer","level":3,"score":0.6361410021781921},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.6340988874435425},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5706285834312439},{"id":"https://openalex.org/C544855455","wikidata":"https://www.wikidata.org/wiki/Q1070952","display_name":"Histopathology","level":2,"score":0.5085386037826538},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4707527756690979},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4289761185646057},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4195171892642975},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4106593430042267},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.36683690547943115},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3548966944217682},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.33925724029541016},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.2717481851577759},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22356194257736206},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17542797327041626},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1626545488834381},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08594229817390442},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004801","descriptor_name":"Eosine Yellowish-(YS)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004801","descriptor_name":"Eosine Yellowish-(YS)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004801","descriptor_name":"Eosine Yellowish-(YS)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btac343","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac343","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3462/44268760/btac343.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35595235","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35595235","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:2104.09310","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2104.09310","pdf_url":"https://arxiv.org/pdf/2104.09310","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:9237721","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9237721","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:trepo.tuni.fi:10024/223181","is_oa":true,"landing_page_url":"https://trepo.tuni.fi/handle/10024/223181","pdf_url":null,"source":{"id":"https://openalex.org/S7407055260","display_name":"Trepo - Institutional Repository of Tampere University","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac343","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac343","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3462/44268760/btac343.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320317161","display_name":"Swedish e-Science Research Centre","ror":"https://ror.org/01e59yk92"},{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3152620848.pdf","grobid_xml":"https://content.openalex.org/works/W3152620848.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W1934094702","https://openalex.org/W1989277387","https://openalex.org/W1991778413","https://openalex.org/W1994847090","https://openalex.org/W1994987687","https://openalex.org/W1998343146","https://openalex.org/W2043672855","https://openalex.org/W2044702943","https://openalex.org/W2051025382","https://openalex.org/W2051409304","https://openalex.org/W2060427373","https://openalex.org/W2096283457","https://openalex.org/W2107633226","https://openalex.org/W2110065044","https://openalex.org/W2115806147","https://openalex.org/W2117539524","https://openalex.org/W2122861585","https://openalex.org/W2130410032","https://openalex.org/W2131357804","https://openalex.org/W2134526812","https://openalex.org/W2137028370","https://openalex.org/W2141011718","https://openalex.org/W2142044692","https://openalex.org/W2145825942","https://openalex.org/W2151494814","https://openalex.org/W2158099560","https://openalex.org/W2161112598","https://openalex.org/W2162081542","https://openalex.org/W2191311785","https://openalex.org/W2340422569","https://openalex.org/W2343697216","https://openalex.org/W2560367415","https://openalex.org/W2608422738","https://openalex.org/W2615697870","https://openalex.org/W2754374178","https://openalex.org/W2763351477","https://openalex.org/W2768348081","https://openalex.org/W2889646458","https://openalex.org/W2900864487","https://openalex.org/W2904355372","https://openalex.org/W2939849806","https://openalex.org/W2944403040","https://openalex.org/W2990787575","https://openalex.org/W2999399991","https://openalex.org/W3014162127","https://openalex.org/W3036882247","https://openalex.org/W3043835773","https://openalex.org/W3044996171","https://openalex.org/W3046305306","https://openalex.org/W3189609148","https://openalex.org/W3211402536","https://openalex.org/W4230373391","https://openalex.org/W4231254854","https://openalex.org/W6704602746","https://openalex.org/W6745609711","https://openalex.org/W6775423900","https://openalex.org/W6813094581"],"related_works":["https://openalex.org/W3039419443","https://openalex.org/W4386772532","https://openalex.org/W4393212117","https://openalex.org/W2115661411","https://openalex.org/W2399391471","https://openalex.org/W2400254106","https://openalex.org/W2970729894","https://openalex.org/W4381996710","https://openalex.org/W2399513595","https://openalex.org/W4294739205"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
