{"id":"https://openalex.org/W4280553929","doi":"https://doi.org/10.1093/bioinformatics/btac327","title":"Assessing and assuring interoperability of a genomics file format","display_name":"Assessing and assuring interoperability of a genomics file format","publication_year":2022,"publication_date":"2022-05-16","ids":{"openalex":"https://openalex.org/W4280553929","doi":"https://doi.org/10.1093/bioinformatics/btac327","pmid":"https://pubmed.ncbi.nlm.nih.gov/35575355"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac327","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac327","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3327/44268899/btac327.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3327/44268899/btac327.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017815916","display_name":"Jeffrey Niu","orcid":"https://orcid.org/0000-0002-5691-8238"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Yi Nian Niu","raw_affiliation_strings":["Princess Margaret Cancer Centre, University Health Network , Toronto, ON, M5G 1L7, Canada"],"raw_orcid":"https://orcid.org/0000-0002-5691-8238","affiliations":[{"raw_affiliation_string":"Princess Margaret Cancer Centre, University Health Network , Toronto, ON, M5G 1L7, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006756973","display_name":"Eric G. Roberts","orcid":"https://orcid.org/0000-0001-5398-358X"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Eric G Roberts","raw_affiliation_strings":["Princess Margaret Cancer Centre, University Health Network , Toronto, ON, M5G 1L7, Canada"],"raw_orcid":"https://orcid.org/0000-0001-5398-358X","affiliations":[{"raw_affiliation_string":"Princess Margaret Cancer Centre, University Health Network , Toronto, ON, M5G 1L7, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016189800","display_name":"Danielle Denisko","orcid":"https://orcid.org/0000-0002-8544-0026"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Danielle Denisko","raw_affiliation_strings":["Department of Medical Biophysics, University of Toronto , Toronto, ON M5G 1L7, Canada","Princess Margaret Cancer Centre, University Health Network , Toronto, ON, M5G 1L7, Canada"],"raw_orcid":"https://orcid.org/0000-0002-8544-0026","affiliations":[{"raw_affiliation_string":"Department of Medical Biophysics, University of Toronto , Toronto, ON M5G 1L7, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Princess Margaret Cancer Centre, University Health Network , Toronto, ON, M5G 1L7, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043633648","display_name":"Michael M. Hoffman","orcid":"https://orcid.org/0000-0002-4517-1562"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]},{"id":"https://openalex.org/I4210127509","display_name":"Vector Institute","ror":"https://ror.org/03kqdja62","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210127509"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Michael M Hoffman","raw_affiliation_strings":["Department of Computer Science, University of Toronto , Toronto, ON M5S 2E4, Canada","Department of Medical Biophysics, University of Toronto , Toronto, ON M5G 1L7, Canada","Princess Margaret Cancer Centre, University Health Network , Toronto, ON, M5G 1L7, Canada","Vector Institute for Artificial Intelligence , Toronto, ON M5G 1M1, Canada"],"raw_orcid":"https://orcid.org/0000-0002-4517-1562","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto , Toronto, ON M5S 2E4, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Department of Medical Biophysics, University of Toronto , Toronto, ON M5G 1L7, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Princess Margaret Cancer Centre, University Health Network , Toronto, ON, M5G 1L7, Canada","institution_ids":["https://openalex.org/I2802654988","https://openalex.org/I1325899441"]},{"raw_affiliation_string":"Vector Institute for Artificial Intelligence , Toronto, ON M5G 1M1, Canada","institution_ids":["https://openalex.org/I4210127509"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5043633648"],"corresponding_institution_ids":["https://openalex.org/I1325899441","https://openalex.org/I185261750","https://openalex.org/I2802654988","https://openalex.org/I4210127509"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.5876,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.62508207,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"38","issue":"13","first_page":"3327","last_page":"3336"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.436599999666214,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.436599999666214,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.17229999601840973,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.08060000091791153,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8244088888168335},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6170951724052429},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.608886182308197},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.6036959290504456},{"id":"https://openalex.org/keywords/test-suite","display_name":"Test suite","score":0.5951945781707764},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.5758521556854248},{"id":"https://openalex.org/keywords/fuzz-testing","display_name":"Fuzz testing","score":0.5712957978248596},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5412508845329285},{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.5000972747802734},{"id":"https://openalex.org/keywords/test-case","display_name":"Test case","score":0.37351667881011963},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.328656941652298},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3004831075668335},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2589499354362488},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.11897242069244385}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8244088888168335},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6170951724052429},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.608886182308197},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.6036959290504456},{"id":"https://openalex.org/C151552104","wikidata":"https://www.wikidata.org/wiki/Q7705809","display_name":"Test suite","level":4,"score":0.5951945781707764},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.5758521556854248},{"id":"https://openalex.org/C111065885","wikidata":"https://www.wikidata.org/wiki/Q1189053","display_name":"Fuzz testing","level":3,"score":0.5712957978248596},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5412508845329285},{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.5000972747802734},{"id":"https://openalex.org/C128942645","wikidata":"https://www.wikidata.org/wiki/Q1568346","display_name":"Test case","level":3,"score":0.37351667881011963},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.328656941652298},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3004831075668335},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2589499354362488},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.11897242069244385},{"id":"https://openalex.org/C152877465","wikidata":"https://www.wikidata.org/wiki/Q208042","display_name":"Regression analysis","level":2,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac327","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac327","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3327/44268899/btac327.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35575355","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35575355","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9237710","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9237710","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac327","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac327","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3327/44268899/btac327.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4280553929.pdf","grobid_xml":"https://content.openalex.org/works/W4280553929.grobid-xml"},"referenced_works_count":94,"referenced_works":["https://openalex.org/W109452506","https://openalex.org/W859230734","https://openalex.org/W1873501834","https://openalex.org/W1959574505","https://openalex.org/W1997854308","https://openalex.org/W2002934700","https://openalex.org/W2014677321","https://openalex.org/W2021341670","https://openalex.org/W2026463029","https://openalex.org/W2029641872","https://openalex.org/W2042465823","https://openalex.org/W2048194168","https://openalex.org/W2060064237","https://openalex.org/W2070342831","https://openalex.org/W2081942683","https://openalex.org/W2101071606","https://openalex.org/W2101384205","https://openalex.org/W2102619694","https://openalex.org/W2103901746","https://openalex.org/W2106578986","https://openalex.org/W2108234281","https://openalex.org/W2108744961","https://openalex.org/W2109676825","https://openalex.org/W2111281047","https://openalex.org/W2112029506","https://openalex.org/W2117131162","https://openalex.org/W2118515267","https://openalex.org/W2119451273","https://openalex.org/W2124535406","https://openalex.org/W2128016314","https://openalex.org/W2129785061","https://openalex.org/W2129958809","https://openalex.org/W2132241624","https://openalex.org/W2133233871","https://openalex.org/W2135540598","https://openalex.org/W2136108853","https://openalex.org/W2137586531","https://openalex.org/W2142270559","https://openalex.org/W2144169186","https://openalex.org/W2149992227","https://openalex.org/W2158948118","https://openalex.org/W2160697532","https://openalex.org/W2167866392","https://openalex.org/W2169497879","https://openalex.org/W2171275132","https://openalex.org/W2171808845","https://openalex.org/W2179308868","https://openalex.org/W2302501749","https://openalex.org/W2315009848","https://openalex.org/W2337209831","https://openalex.org/W2341539131","https://openalex.org/W2486831194","https://openalex.org/W2529838505","https://openalex.org/W2534699084","https://openalex.org/W2549536905","https://openalex.org/W2551432253","https://openalex.org/W2554926829","https://openalex.org/W2609153336","https://openalex.org/W2737585591","https://openalex.org/W2765745983","https://openalex.org/W2808352813","https://openalex.org/W2898192927","https://openalex.org/W2899616402","https://openalex.org/W2904450217","https://openalex.org/W2912623135","https://openalex.org/W2920490799","https://openalex.org/W2934953754","https://openalex.org/W2938974558","https://openalex.org/W2947249681","https://openalex.org/W2950006249","https://openalex.org/W2950199265","https://openalex.org/W2950506088","https://openalex.org/W2950817743","https://openalex.org/W2950986437","https://openalex.org/W2951034038","https://openalex.org/W2951149781","https://openalex.org/W2952191974","https://openalex.org/W2953027885","https://openalex.org/W2953263404","https://openalex.org/W2962240230","https://openalex.org/W3002964216","https://openalex.org/W3003835559","https://openalex.org/W3013880401","https://openalex.org/W3018603462","https://openalex.org/W3022572641","https://openalex.org/W3080775827","https://openalex.org/W3104066961","https://openalex.org/W3118497926","https://openalex.org/W3147574308","https://openalex.org/W3210531406","https://openalex.org/W3213819329","https://openalex.org/W4233582454","https://openalex.org/W4353062956","https://openalex.org/W6604335577"],"related_works":["https://openalex.org/W1485837041","https://openalex.org/W2074710475","https://openalex.org/W3204955359","https://openalex.org/W1598160211","https://openalex.org/W2515553645","https://openalex.org/W2018145554","https://openalex.org/W1524028411","https://openalex.org/W2138059712","https://openalex.org/W2127248783","https://openalex.org/W2067499928"],"abstract_inverted_index":{"MOTIVATION:":[0],"Bioinformatics":[1,230],"software":[2,85,146,203],"tools":[3,30,49,95],"operate":[4],"largely":[5],"through":[6],"the":[7,26,104,107,111,118,127,165,178,208,212],"use":[8,194],"of":[9,28,38,106,113,121,168,171],"specialized":[10],"genomics":[11],"file":[12],"formats.":[13],"Often":[14],"these":[15,29],"formats":[16],"lack":[17],"formal":[18],"specification,":[19],"making":[20],"it":[21],"difficult":[22],"or":[23],"impossible":[24],"for":[25,35,80,164],"creators":[27],"to":[31,64,90,139,195,206],"robustly":[32],"test":[33,157,181,213],"them":[34],"correct":[36,81,92],"handling":[37],"input":[39,119],"and":[40,55,205],"output.":[41],"This":[42],"causes":[43,163],"problems":[44],"in":[45,67,83],"interoperability":[46,60],"between":[47],"different":[48,169],"that,":[50],"at":[51,221,229],"best,":[52],"wastes":[53],"time":[54],"frustrates":[56],"users.":[57],"At":[58],"worst,":[59],"issues":[61],"could":[62,183],"lead":[63],"undetected":[65],"errors":[66,176],"scientific":[68],"results.":[69],"RESULTS:":[70],"We":[71,87,133,159,185],"developed":[72],"a":[73,136,188],"new":[74],"verification":[75],"system,":[76],"Acidbio,":[77],"which":[78,199],"tests":[79,89],"behavior":[82,93],"bioinformatics":[84],"packages.":[86],"crafted":[88],"unify":[91],"when":[94],"encounter":[96],"various":[97],"edge":[98],"cases-potentially":[99],"unexpected":[100],"inputs":[101],"that":[102,125,177,191],"exemplify":[103],"limits":[105],"format.":[108,132],"To":[109],"analyze":[110],"performance":[112,167,210],"existing":[114],"software,":[115],"we":[116],"tested":[117],"validation":[120],"80":[122,145],"Bioconda":[123],"packages":[124,147],"parsed":[126],"Browser":[128],"Extensible":[129],"Data":[130],"(BED)":[131],"also":[134,186],"used":[135],"fuzzing":[137],"approach":[138],"automatically":[140],"perform":[141],"additional":[142],"testing.":[143],"Of":[144],"examined,":[148],"75":[149],"achieved":[150],"less":[151],"than":[152],"70%":[153],"correctness":[154],"on":[155,211],"our":[156],"suite.":[158,214],"categorized":[160],"multiple":[161],"root":[162],"poor":[166],"types":[170],"software.":[172],"Fuzzing":[173],"detected":[174],"other":[175],"manually":[179],"designed":[180],"suite":[182],"not.":[184],"created":[187],"badge":[189],"system":[190],"developers":[192],"can":[193],"indicate":[196],"more":[197],"precisely":[198],"BED":[200],"variants":[201],"their":[202],"accepts":[204],"advertise":[207],"software's":[209],"AVAILABILITY":[215],"AND":[216],"IMPLEMENTATION:":[217],"Acidbio":[218],"is":[219],"available":[220,228],"https://github.com/hoffmangroup/acidbio.":[222],"SUPPLEMENTARY":[223],"INFORMATION:":[224],"Supplementary":[225],"data":[226],"are":[227],"online.":[231]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}