{"id":"https://openalex.org/W4280592348","doi":"https://doi.org/10.1093/bioinformatics/btac322","title":"GLIDER: function prediction from GLIDE-based neighborhoods","display_name":"GLIDER: function prediction from GLIDE-based neighborhoods","publication_year":2022,"publication_date":"2022-05-10","ids":{"openalex":"https://openalex.org/W4280592348","doi":"https://doi.org/10.1093/bioinformatics/btac322","pmid":"https://pubmed.ncbi.nlm.nih.gov/35575379"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac322","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac322","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3395/44268870/btac322.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3395/44268870/btac322.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036303987","display_name":"Kapil Devkota","orcid":"https://orcid.org/0000-0002-6093-6260"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kapil Devkota","raw_affiliation_strings":["Department of Computer Science, Tufts University , Medford, MA 02155, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Tufts University , Medford, MA 02155, USA","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013775199","display_name":"Henri Schmidt","orcid":"https://orcid.org/0000-0002-0132-3472"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Henri Schmidt","raw_affiliation_strings":["Department of Computer Science, Tufts University , Medford, MA 02155, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Tufts University , Medford, MA 02155, USA","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061903774","display_name":"Matthew Werenski","orcid":"https://orcid.org/0000-0003-3633-9893"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matt Werenski","raw_affiliation_strings":["Department of Computer Science, Tufts University , Medford, MA 02155, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Tufts University , Medford, MA 02155, USA","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022923838","display_name":"James M. Murphy","orcid":"https://orcid.org/0000-0001-6598-044X"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James M Murphy","raw_affiliation_strings":["Department of Mathematics, Tufts University , Medford, MA 02155, USA"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Tufts University , Medford, MA 02155, USA","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028761606","display_name":"Mert Erden","orcid":"https://orcid.org/0000-0003-4718-9181"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mert Erden","raw_affiliation_strings":["Department of Computer Science, Tufts University , Medford, MA 02155, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Tufts University , Medford, MA 02155, USA","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064276138","display_name":"Victor Arsenescu","orcid":"https://orcid.org/0000-0003-0007-2891"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Victor Arsenescu","raw_affiliation_strings":["Department of Computer Science, Tufts University , Medford, MA 02155, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Tufts University , Medford, MA 02155, USA","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026411021","display_name":"Lenore Cowen","orcid":"https://orcid.org/0000-0001-6698-6413"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lenore J Cowen","raw_affiliation_strings":["Department of Computer Science, Tufts University , Medford, MA 02155, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Tufts University , Medford, MA 02155, USA","institution_ids":["https://openalex.org/I121934306"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5026411021"],"corresponding_institution_ids":["https://openalex.org/I121934306"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.8578,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.70527581,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"38","issue":"13","first_page":"3395","last_page":"3406"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9559000134468079,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9559000134468079,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9526000022888184,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.95169997215271,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/glider","display_name":"Glider","score":0.9564284682273865},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.607352077960968},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49268609285354614},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2575596570968628},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1312250792980194},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.060650914907455444}],"concepts":[{"id":"https://openalex.org/C73525677","wikidata":"https://www.wikidata.org/wiki/Q2396202","display_name":"Glider","level":2,"score":0.9564284682273865},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.607352077960968},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49268609285354614},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2575596570968628},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1312250792980194},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.060650914907455444}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac322","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac322","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3395/44268870/btac322.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35575379","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35575379","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9237677","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9237677","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac322","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac322","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/13/3395/44268870/btac322.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1978827032","display_name":null,"funder_award_id":"DMS 1812503","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6385940214","display_name":null,"funder_award_id":"CCF 1934553","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4280592348.pdf","grobid_xml":"https://content.openalex.org/works/W4280592348.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W292280589","https://openalex.org/W968676095","https://openalex.org/W1486817521","https://openalex.org/W1832257936","https://openalex.org/W1857762931","https://openalex.org/W1989293830","https://openalex.org/W1990223774","https://openalex.org/W1994276796","https://openalex.org/W1996614649","https://openalex.org/W2034087770","https://openalex.org/W2036568936","https://openalex.org/W2042317317","https://openalex.org/W2042379060","https://openalex.org/W2047766237","https://openalex.org/W2096173332","https://openalex.org/W2098427571","https://openalex.org/W2117486996","https://openalex.org/W2141459724","https://openalex.org/W2159675211","https://openalex.org/W2160699408","https://openalex.org/W2170241526","https://openalex.org/W2227395312","https://openalex.org/W2556519015","https://openalex.org/W2557833574","https://openalex.org/W2558534012","https://openalex.org/W2587354049","https://openalex.org/W2624021832","https://openalex.org/W2895487334","https://openalex.org/W2937762029","https://openalex.org/W2945896312","https://openalex.org/W2950742983","https://openalex.org/W2951422523","https://openalex.org/W2953588115","https://openalex.org/W2962756421","https://openalex.org/W2963869303","https://openalex.org/W2970771711","https://openalex.org/W2972937106","https://openalex.org/W2986932567","https://openalex.org/W2989608901","https://openalex.org/W2997970462","https://openalex.org/W3018284986","https://openalex.org/W3043771525","https://openalex.org/W3087180599","https://openalex.org/W3107527779","https://openalex.org/W3128448394","https://openalex.org/W3131925794","https://openalex.org/W6610440636","https://openalex.org/W6761142732","https://openalex.org/W6790883972"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2622364010","https://openalex.org/W2146420162","https://openalex.org/W2393310714","https://openalex.org/W4308986245","https://openalex.org/W2561946090","https://openalex.org/W4388021252","https://openalex.org/W2160505973","https://openalex.org/W4389543637","https://openalex.org/W585747388"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2022,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
