{"id":"https://openalex.org/W4225107300","doi":"https://doi.org/10.1093/bioinformatics/btac291","title":"TRamWAy: mapping physical properties of individual biomolecule random motion in large-scale single-particle tracking experiments","display_name":"TRamWAy: mapping physical properties of individual biomolecule random motion in large-scale single-particle tracking experiments","publication_year":2022,"publication_date":"2022-04-25","ids":{"openalex":"https://openalex.org/W4225107300","doi":"https://doi.org/10.1093/bioinformatics/btac291","pmid":"https://pubmed.ncbi.nlm.nih.gov/35482486"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac291","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac291","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045785542","display_name":"Fran\u00e7ois Laurent","orcid":"https://orcid.org/0000-0002-1615-6400"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Fran\u00e7ois Laurent","raw_affiliation_strings":["Decision and Bayesian Computation, Computational Biology Department, Neuroscience Department , CNRS USR 3756, CNRS UMR 3571, Institut Pasteur , Paris 75015, France","Institut Pasteur, Universit\u00e9 Paris Cit\u00e9, Bioinformatics and Biostatistics Hub , Paris F-75015, France"],"affiliations":[{"raw_affiliation_string":"Decision and Bayesian Computation, Computational Biology Department, Neuroscience Department , CNRS USR 3756, CNRS UMR 3571, Institut Pasteur , Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Institut Pasteur, Universit\u00e9 Paris Cit\u00e9, Bioinformatics and Biostatistics Hub , Paris F-75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I204730241"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052899950","display_name":"Hippolyte Verdier","orcid":"https://orcid.org/0000-0002-3650-0555"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I3018075036","display_name":"Sanofi (France)","ror":"https://ror.org/02n6c9837","country_code":"FR","type":"company","lineage":["https://openalex.org/I3018075036"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Hippolyte Verdier","raw_affiliation_strings":["Decision and Bayesian Computation, Computational Biology Department, Neuroscience Department , CNRS USR 3756, CNRS UMR 3571, Institut Pasteur , Paris 75015, France","Histopathology and Bio-Imaging Group, Sanofi R&D , Vitry-Sur-Seine 94400, France","Universit\u00e9 Paris Cit\u00e9, UFR de Physique , Paris 75013, France"],"affiliations":[{"raw_affiliation_string":"Decision and Bayesian Computation, Computational Biology Department, Neuroscience Department , CNRS USR 3756, CNRS UMR 3571, Institut Pasteur , Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Histopathology and Bio-Imaging Group, Sanofi R&D , Vitry-Sur-Seine 94400, France","institution_ids":["https://openalex.org/I3018075036"]},{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, UFR de Physique , Paris 75013, France","institution_ids":["https://openalex.org/I204730241"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006809544","display_name":"Maxime Duval","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Maxime Duval","raw_affiliation_strings":["Decision and Bayesian Computation, Computational Biology Department, Neuroscience Department , CNRS USR 3756, CNRS UMR 3571, Institut Pasteur , Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Decision and Bayesian Computation, Computational Biology Department, Neuroscience Department , CNRS USR 3756, CNRS UMR 3571, Institut Pasteur , Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071211393","display_name":"Alexander S. Serov","orcid":"https://orcid.org/0000-0003-1074-8242"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alexander Serov","raw_affiliation_strings":["Decision and Bayesian Computation, Computational Biology Department, Neuroscience Department , CNRS USR 3756, CNRS UMR 3571, Institut Pasteur , Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Decision and Bayesian Computation, Computational Biology Department, Neuroscience Department , CNRS USR 3756, CNRS UMR 3571, Institut Pasteur , Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080298742","display_name":"Christian L. Vestergaard","orcid":"https://orcid.org/0000-0001-5329-475X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christian L Vestergaard","raw_affiliation_strings":["Decision and Bayesian Computation, Computational Biology Department, Neuroscience Department , CNRS USR 3756, CNRS UMR 3571, Institut Pasteur , Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Decision and Bayesian Computation, Computational Biology Department, Neuroscience Department , CNRS USR 3756, CNRS UMR 3571, Institut Pasteur , Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081818221","display_name":"Jean\u2010Baptiste Masson","orcid":"https://orcid.org/0000-0002-5484-9056"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Jean-Baptiste Masson","raw_affiliation_strings":["Decision and Bayesian Computation, Computational Biology Department, Neuroscience Department , CNRS USR 3756, CNRS UMR 3571, Institut Pasteur , Paris 75015, France"],"affiliations":[{"raw_affiliation_string":"Decision and Bayesian Computation, Computational Biology Department, Neuroscience Department , CNRS USR 3756, CNRS UMR 3571, Institut Pasteur , Paris 75015, France","institution_ids":["https://openalex.org/I157536573","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5045785542","https://openalex.org/A5081818221"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I157536573","https://openalex.org/I204730241"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.1128,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.87857234,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"38","issue":"11","first_page":"3149","last_page":"3150"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12466","display_name":"Near-Field Optical Microscopy","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8368288278579712},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.7745746970176697},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.7222196459770203},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7162761688232422},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5547406673431396},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.47944894433021545},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.46134501695632935},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4428287446498871},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.43292033672332764},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.41985562443733215},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40353840589523315},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1677328646183014},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.10530191659927368}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8368288278579712},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.7745746970176697},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.7222196459770203},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7162761688232422},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5547406673431396},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.47944894433021545},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.46134501695632935},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4428287446498871},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.43292033672332764},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.41985562443733215},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40353840589523315},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1677328646183014},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.10530191659927368},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D009038","descriptor_name":"Motion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009038","descriptor_name":"Motion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009038","descriptor_name":"Motion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac291","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac291","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35482486","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35482486","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:pasteur-03695448v1","is_oa":false,"landing_page_url":"https://pasteur.hal.science/pasteur-03695448","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2022, 38 (11), pp.3149-3150. &#x27E8;10.1093/bioinformatics/btac291&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1506471934","display_name":null,"funder_award_id":"ANR-17-CE23-0016","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G2991422839","display_name":null,"funder_award_id":"PIA/ANR-16-CONV-0005","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5838787665","display_name":null,"funder_award_id":"ANR-19-P3IA-0001","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W2054455698","https://openalex.org/W2092591295","https://openalex.org/W2105916176","https://openalex.org/W2167185762","https://openalex.org/W2335246627","https://openalex.org/W2605803411","https://openalex.org/W2898635015","https://openalex.org/W2908968473","https://openalex.org/W2989854243","https://openalex.org/W3004530343","https://openalex.org/W3009163875","https://openalex.org/W3013696085","https://openalex.org/W3015794599","https://openalex.org/W3087558468"],"related_works":["https://openalex.org/W2068663075","https://openalex.org/W1657880117","https://openalex.org/W2595172197","https://openalex.org/W2127970246","https://openalex.org/W2978678743","https://openalex.org/W2084856301","https://openalex.org/W1001352512","https://openalex.org/W2549786917","https://openalex.org/W2789551765","https://openalex.org/W1486009489"],"abstract_inverted_index":{"TRamWAy":[0],"is":[1,16],"a":[2],"Python":[3],"library":[4],"and":[5,11],"can":[6],"be":[7],"installed":[8],"with":[9],"pip":[10],"conda.":[12],"The":[13],"source":[14],"code":[15],"available":[17],"at":[18],"https://github.com/DecBayComp/TRamWAy.":[19]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
