{"id":"https://openalex.org/W4224287786","doi":"https://doi.org/10.1093/bioinformatics/btac287","title":"SimPlot++: a Python application for representing sequence similarity and detecting recombination","display_name":"SimPlot++: a Python application for representing sequence similarity and detecting recombination","publication_year":2022,"publication_date":"2022-04-19","ids":{"openalex":"https://openalex.org/W4224287786","doi":"https://doi.org/10.1093/bioinformatics/btac287","pmid":"https://pubmed.ncbi.nlm.nih.gov/35451456"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac287","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac287","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040795921","display_name":"St\u00e9phane Samson","orcid":"https://orcid.org/0009-0004-3869-7787"},"institutions":[{"id":"https://openalex.org/I159129438","display_name":"Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al","ror":"https://ror.org/002rjbv21","country_code":"CA","type":"education","lineage":["https://openalex.org/I159129438","https://openalex.org/I49663120"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"St\u00e9phane Samson","raw_affiliation_strings":["Department of Computer Sciences, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al , Montreal, QC H3T 1N8, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al , Montreal, QC H3T 1N8, Canada","institution_ids":["https://openalex.org/I159129438"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002300977","display_name":"\u00c9tienne Lord","orcid":"https://orcid.org/0000-0002-3834-6096"},"institutions":[{"id":"https://openalex.org/I1331897569","display_name":"Agriculture and Agri-Food Canada","ror":"https://ror.org/051dzs374","country_code":"CA","type":"government","lineage":["https://openalex.org/I1331897569","https://openalex.org/I2802286613"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"\u00c9tienne Lord","raw_affiliation_strings":["Agriculture and Agri-Food Canada , Saint-Jean-sur-Richelieu, QC J3B 3E6, Canada"],"affiliations":[{"raw_affiliation_string":"Agriculture and Agri-Food Canada , Saint-Jean-sur-Richelieu, QC J3B 3E6, Canada","institution_ids":["https://openalex.org/I1331897569"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004592090","display_name":"Vladimir Makarenkov","orcid":"https://orcid.org/0000-0003-3753-5925"},"institutions":[{"id":"https://openalex.org/I159129438","display_name":"Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al","ror":"https://ror.org/002rjbv21","country_code":"CA","type":"education","lineage":["https://openalex.org/I159129438","https://openalex.org/I49663120"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Vladimir Makarenkov","raw_affiliation_strings":["Department of Computer Sciences, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al , Montreal, QC H3T 1N8, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Sciences, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al , Montreal, QC H3T 1N8, Canada","institution_ids":["https://openalex.org/I159129438"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5004592090"],"corresponding_institution_ids":["https://openalex.org/I159129438"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":27.1628,"has_fulltext":false,"cited_by_count":139,"citation_normalized_percentile":{"value":0.99766485,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"38","issue":"11","first_page":"3118","last_page":"3120"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11112","display_name":"Viral Infections and Immunology Research","score":0.9675999879837036,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.9156191349029541},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6059935092926025},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.45588716864585876},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34727659821510315},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3326706886291504},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2430703341960907},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18690183758735657}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.9156191349029541},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6059935092926025},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.45588716864585876},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34727659821510315},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3326706886291504},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2430703341960907},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18690183758735657}],"mesh":[{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btac287","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac287","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35451456","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35451456","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1987157480","display_name":null,"funder_award_id":"173878","funder_id":"https://openalex.org/F4320321747","funder_display_name":"Fonds Qu\u00e9b\u00e9cois de la Recherche sur la Nature et les Technologies"},{"id":"https://openalex.org/G4926246454","display_name":null,"funder_award_id":"249644","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320321747","display_name":"Fonds Qu\u00e9b\u00e9cois de la Recherche sur la Nature et les Technologies","ror":"https://ror.org/00b9f9778"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1973667633","https://openalex.org/W1990096140","https://openalex.org/W2092339835","https://openalex.org/W2100225159","https://openalex.org/W2101289352","https://openalex.org/W2103072823","https://openalex.org/W2104287568","https://openalex.org/W2113561798","https://openalex.org/W2130582243","https://openalex.org/W2147169455","https://openalex.org/W2155645165","https://openalex.org/W2159675211","https://openalex.org/W2163400707","https://openalex.org/W2170587743","https://openalex.org/W2171126517","https://openalex.org/W2211675957","https://openalex.org/W2568073385","https://openalex.org/W2991248488","https://openalex.org/W3002103667","https://openalex.org/W3111125496","https://openalex.org/W3125550983","https://openalex.org/W3191027841","https://openalex.org/W6786673101"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W2207495067","https://openalex.org/W1906486629"],"abstract_inverted_index":{"SimPlot++":[0],"is":[1],"freely":[2],"available":[3],"on":[4],"GitHub":[5],"at:":[6],"https://github.com/Stephane-S/Simplot_PlusPlus,":[7],"as":[8],"both":[9],"an":[10],"executable":[11],"file":[12],"(for":[13,18],"Windows)":[14],"and":[15],"Python":[16],"scripts":[17],"Windows/Linux/MacOS).":[19]},"counts_by_year":[{"year":2026,"cited_by_count":18},{"year":2025,"cited_by_count":42},{"year":2024,"cited_by_count":49},{"year":2023,"cited_by_count":13},{"year":2022,"cited_by_count":17}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
