{"id":"https://openalex.org/W4225476238","doi":"https://doi.org/10.1093/bioinformatics/btac268","title":"spicyR: spatial analysis of <i>in situ</i> cytometry data in R","display_name":"spicyR: spatial analysis of <i>in situ</i> cytometry data in R","publication_year":2022,"publication_date":"2022-04-14","ids":{"openalex":"https://openalex.org/W4225476238","doi":"https://doi.org/10.1093/bioinformatics/btac268","pmid":"https://pubmed.ncbi.nlm.nih.gov/35438129"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac268","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac268","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/11/3099/45093378/btac268.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/11/3099/45093378/btac268.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060741624","display_name":"Nicolas Canete","orcid":"https://orcid.org/0000-0001-8217-0246"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I4210145422","display_name":"Westmead Institute for Medical Research","ror":"https://ror.org/04zj3ra44","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210145422"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Nicolas P Canete","raw_affiliation_strings":["Sydney Medical School, University of Sydney , Sydney, NSW, Australia","The Westmead Institute for Medical Research, University of Sydney , Westmead, NSW, Australia"],"raw_orcid":"https://orcid.org/0000-0001-8217-0246","affiliations":[{"raw_affiliation_string":"Sydney Medical School, University of Sydney , Sydney, NSW, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"The Westmead Institute for Medical Research, University of Sydney , Westmead, NSW, Australia","institution_ids":["https://openalex.org/I4210145422","https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059599323","display_name":"Sourish S. Iyengar","orcid":null},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sourish S Iyengar","raw_affiliation_strings":["School of Mathematics and Statistics, University of Sydney , Sydney, NSW, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, University of Sydney , Sydney, NSW, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050677327","display_name":"John T. Ormerod","orcid":"https://orcid.org/0000-0002-4650-7507"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"John T Ormerod","raw_affiliation_strings":["School of Mathematics and Statistics, University of Sydney , Sydney, NSW, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, University of Sydney , Sydney, NSW, Australia","institution_ids":["https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064721344","display_name":"Heeva Baharlou","orcid":"https://orcid.org/0000-0001-8259-1059"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I4210145422","display_name":"Westmead Institute for Medical Research","ror":"https://ror.org/04zj3ra44","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210145422"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Heeva Baharlou","raw_affiliation_strings":["Sydney Medical School, University of Sydney , Sydney, NSW, Australia","The Westmead Institute for Medical Research, University of Sydney , Westmead, NSW, Australia"],"raw_orcid":"https://orcid.org/0000-0001-8259-1059","affiliations":[{"raw_affiliation_string":"Sydney Medical School, University of Sydney , Sydney, NSW, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"The Westmead Institute for Medical Research, University of Sydney , Westmead, NSW, Australia","institution_ids":["https://openalex.org/I4210145422","https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037019257","display_name":"Andrew N. Harman","orcid":"https://orcid.org/0000-0003-1535-1279"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I4210145422","display_name":"Westmead Institute for Medical Research","ror":"https://ror.org/04zj3ra44","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210145422"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Andrew N Harman","raw_affiliation_strings":["Sydney Medical School, University of Sydney , Sydney, NSW, Australia","The Westmead Institute for Medical Research, University of Sydney , Westmead, NSW, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sydney Medical School, University of Sydney , Sydney, NSW, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"The Westmead Institute for Medical Research, University of Sydney , Westmead, NSW, Australia","institution_ids":["https://openalex.org/I4210145422","https://openalex.org/I129604602"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042620584","display_name":"Ellis Patrick","orcid":"https://orcid.org/0000-0002-5253-4747"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I4210145422","display_name":"Westmead Institute for Medical Research","ror":"https://ror.org/04zj3ra44","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210145422"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Ellis Patrick","raw_affiliation_strings":["School of Mathematics and Statistics, University of Sydney , Sydney, NSW, Australia","The Westmead Institute for Medical Research, University of Sydney , Westmead, NSW, Australia"],"raw_orcid":"https://orcid.org/0000-0002-5253-4747","affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, University of Sydney , Sydney, NSW, Australia","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"The Westmead Institute for Medical Research, University of Sydney , Westmead, NSW, Australia","institution_ids":["https://openalex.org/I4210145422","https://openalex.org/I129604602"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5042620584"],"corresponding_institution_ids":["https://openalex.org/I129604602","https://openalex.org/I4210145422"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":12.4072,"has_fulltext":false,"cited_by_count":54,"citation_normalized_percentile":{"value":0.98636191,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"38","issue":"11","first_page":"3099","last_page":"3105"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.7613000273704529,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.7613000273704529,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.18629999458789825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.007600000128149986,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6443883776664734},{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.6327450275421143},{"id":"https://openalex.org/keywords/mass-cytometry","display_name":"Mass cytometry","score":0.6228632926940918},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6065947413444519},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4986848831176758},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4969976246356964},{"id":"https://openalex.org/keywords/cytometry","display_name":"Cytometry","score":0.4411204159259796},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.43860650062561035},{"id":"https://openalex.org/keywords/cell-type","display_name":"Cell type","score":0.42182791233062744},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4109255075454712},{"id":"https://openalex.org/keywords/data-type","display_name":"Data type","score":0.4105026423931122},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33748024702072144},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.3320842385292053},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3093981146812439},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.276113361120224},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.13839629292488098}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6443883776664734},{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.6327450275421143},{"id":"https://openalex.org/C2778015335","wikidata":"https://www.wikidata.org/wiki/Q17051163","display_name":"Mass cytometry","level":4,"score":0.6228632926940918},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6065947413444519},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4986848831176758},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4969976246356964},{"id":"https://openalex.org/C2780339063","wikidata":"https://www.wikidata.org/wiki/Q5201367","display_name":"Cytometry","level":3,"score":0.4411204159259796},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.43860650062561035},{"id":"https://openalex.org/C189014844","wikidata":"https://www.wikidata.org/wiki/Q189118","display_name":"Cell type","level":3,"score":0.42182791233062744},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4109255075454712},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.4105026423931122},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33748024702072144},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.3320842385292053},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3093981146812439},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.276113361120224},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.13839629292488098},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062206","descriptor_name":"Spatial Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062206","descriptor_name":"Spatial Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062206","descriptor_name":"Spatial Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac268","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac268","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/11/3099/45093378/btac268.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35438129","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35438129","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9326848","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9326848","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac268","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac268","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/11/3099/45093378/btac268.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1818937361","https://openalex.org/W1951724000","https://openalex.org/W2043565262","https://openalex.org/W2053129129","https://openalex.org/W2059940278","https://openalex.org/W2107554012","https://openalex.org/W2126537932","https://openalex.org/W2193067168","https://openalex.org/W2548342201","https://openalex.org/W2743344672","https://openalex.org/W2774486220","https://openalex.org/W2887091285","https://openalex.org/W2890156321","https://openalex.org/W2913671661","https://openalex.org/W2949238013","https://openalex.org/W2972983657","https://openalex.org/W2978551960","https://openalex.org/W2983984892","https://openalex.org/W2999681746","https://openalex.org/W3011278583","https://openalex.org/W3047081808","https://openalex.org/W3117538519","https://openalex.org/W4233078437","https://openalex.org/W4250310729","https://openalex.org/W6658577223"],"related_works":["https://openalex.org/W2522948376","https://openalex.org/W2886484539","https://openalex.org/W2176701861","https://openalex.org/W2982252354","https://openalex.org/W2612538354","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W3156537409","https://openalex.org/W2889103878"],"abstract_inverted_index":{"MOTIVATION:":[0],"High":[1],"parameter":[2],"histological":[3],"techniques":[4,45],"have":[5,46,101],"allowed":[6],"for":[7,78],"the":[8,25,30,54,68,103,113,133,158],"identification":[9],"of":[10,13,24,36,90,116,120,135],"a":[11,21,59,96,127,141],"variety":[12],"distinct":[14],"cell":[15],"types":[16,117],"within":[17,53,67],"an":[18,88],"image,":[19],"providing":[20],"comprehensive":[22],"overview":[23],"tissue":[26,38],"environment.":[27],"This":[28],"allows":[29,163],"complex":[31],"cellular":[32,92,152,166],"architecture":[33],"and":[34,130,187],"environment":[35],"diseased":[37],"to":[39,107,123,140,157,168],"be":[40,169],"explored.":[41],"While":[42],"spatial":[43,114],"analysis":[44],"revealed":[47],"how":[48,91],"cell-cell":[49],"interactions":[50,66],"are":[51,73,197],"important":[52],"disease":[55,69,97,159,175],"pathology,":[56],"there":[57,72],"remains":[58],"gap":[60],"in":[61,64,112,151,165],"exploring":[62],"changes":[63,84,111,150,164],"these":[65],"process.":[70],"Specifically,":[71],"currently":[74],"few":[75],"established":[76],"methods":[77],"performing":[79],"inference":[80,109],"on":[81,110],"cell-type":[82],"co-localization":[83,115],"across":[85,118],"images,":[86],"hindering":[87],"understanding":[89],"environments":[93,167],"change":[94],"with":[95],"pathology.":[98],"RESULTS:":[99],"We":[100,132],"developed":[102],"spicyR":[104,136,162],"R":[105,180],"package":[106,181],"perform":[108],"groups":[119],"images.":[121],"Application":[122],"simulated":[124],"data":[125,196],"demonstrates":[126],"high":[128],"sensitivity":[129],"specificity.":[131],"utility":[134],"by":[137],"applying":[138],"it":[139],"type":[142],"1":[143],"diabetes":[144],"imaging":[145],"mass":[146],"cytometry":[147],"dataset,":[148],"revealing":[149],"associations":[153],"that":[154],"were":[155],"relevant":[156],"progression.":[160],"Ultimately,":[161],"explored":[170],"under":[171],"different":[172],"pathologies":[173],"or":[174],"states.":[176],"AVAILABILITY":[177],"AND":[178],"IMPLEMENTATION:":[179],"is":[182],"freely":[183],"available":[184,198],"at":[185,191,199],"http://bioconductor.org/packages/release/bioc/html/spicyR.html":[186],"shiny":[188],"app":[189],"implementation":[190],"http://shiny.maths.usyd.edu.au/spicyR/.":[192],"SUPPLEMENTARY":[193],"INFORMATION:":[194],"Supplementary":[195],"Bioinformatics":[200],"online.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":19},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":4}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2022-05-05T00:00:00"}
