{"id":"https://openalex.org/W4226094768","doi":"https://doi.org/10.1093/bioinformatics/btac266","title":"A graph neural network approach for molecule carcinogenicity prediction","display_name":"A graph neural network approach for molecule carcinogenicity prediction","publication_year":2022,"publication_date":"2022-04-14","ids":{"openalex":"https://openalex.org/W4226094768","doi":"https://doi.org/10.1093/bioinformatics/btac266","pmid":"https://pubmed.ncbi.nlm.nih.gov/35758812"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac266","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac266","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bioinformatics/btac266","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008344095","display_name":"Philip Fradkin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210127509","display_name":"Vector Institute","ror":"https://ror.org/03kqdja62","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210127509"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Philip Fradkin","raw_affiliation_strings":["Department of Electrical & Computer Engineering, University of Toronto , Toronto, ON M5S 3G8, Canada","Vector Institute , Toronto, ON M5G 1M1, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Electrical & Computer Engineering, University of Toronto , Toronto, ON M5S 3G8, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Vector Institute , Toronto, ON M5G 1M1, Canada","institution_ids":["https://openalex.org/I4210127509"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028303962","display_name":"Adamo Young","orcid":"https://orcid.org/0000-0001-5620-6241"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I4210127509","display_name":"Vector Institute","ror":"https://ror.org/03kqdja62","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210127509"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Adamo Young","raw_affiliation_strings":["Department of Computer Science, University of Toronto , Toronto, ON M5S 2E4, Canada","Vector Institute , Toronto, ON M5G 1M1, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto , Toronto, ON M5S 2E4, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Vector Institute , Toronto, ON M5G 1M1, Canada","institution_ids":["https://openalex.org/I4210127509"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077787549","display_name":"Lazar Atanackovic","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I4210127509","display_name":"Vector Institute","ror":"https://ror.org/03kqdja62","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210127509"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Lazar Atanackovic","raw_affiliation_strings":["Department of Electrical & Computer Engineering, University of Toronto , Toronto, ON M5S 3G8, Canada","Vector Institute , Toronto, ON M5G 1M1, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Electrical & Computer Engineering, University of Toronto , Toronto, ON M5S 3G8, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Vector Institute , Toronto, ON M5G 1M1, Canada","institution_ids":["https://openalex.org/I4210127509"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003361977","display_name":"Brendan J. Frey","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I4210127509","display_name":"Vector Institute","ror":"https://ror.org/03kqdja62","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210127509"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Brendan Frey","raw_affiliation_strings":["Department of Computer Science, University of Toronto , Toronto, ON M5S 2E4, Canada","Department of Electrical & Computer Engineering, University of Toronto , Toronto, ON M5S 3G8, Canada","Vector Institute , Toronto, ON M5G 1M1, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto , Toronto, ON M5S 2E4, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Department of Electrical & Computer Engineering, University of Toronto , Toronto, ON M5S 3G8, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Vector Institute , Toronto, ON M5G 1M1, Canada","institution_ids":["https://openalex.org/I4210127509"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076034535","display_name":"Leo J. Lee","orcid":"https://orcid.org/0000-0003-1829-1187"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I4210127509","display_name":"Vector Institute","ror":"https://ror.org/03kqdja62","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210127509"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Leo J Lee","raw_affiliation_strings":["Department of Electrical & Computer Engineering, University of Toronto , Toronto, ON M5S 3G8, Canada","Vector Institute , Toronto, ON M5G 1M1, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Electrical & Computer Engineering, University of Toronto , Toronto, ON M5S 3G8, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Vector Institute , Toronto, ON M5G 1M1, Canada","institution_ids":["https://openalex.org/I4210127509"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100408160","display_name":"Bo Wang","orcid":"https://orcid.org/0000-0002-9620-3413"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I4210127509","display_name":"Vector Institute","ror":"https://ror.org/03kqdja62","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210127509"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Bo Wang","raw_affiliation_strings":["Department of Computer Science, University of Toronto , Toronto, ON M5S 2E4, Canada","Laboratory Medicine and Pathobiology, University of Toronto , Toronto, ON M5S 1A8, Canada","Peter Munk Cardiac Center, UHN , Toronto, ON M5G 2N2, Canada","Vector Institute , Toronto, ON M5G 1M1, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto , Toronto, ON M5S 2E4, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Laboratory Medicine and Pathobiology, University of Toronto , Toronto, ON M5S 1A8, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Peter Munk Cardiac Center, UHN , Toronto, ON M5G 2N2, Canada","institution_ids":[]},{"raw_affiliation_string":"Vector Institute , Toronto, ON M5G 1M1, Canada","institution_ids":["https://openalex.org/I4210127509"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5076034535","https://openalex.org/A5100408160"],"corresponding_institution_ids":["https://openalex.org/I185261750","https://openalex.org/I4210127509"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.0599,"has_fulltext":false,"cited_by_count":31,"citation_normalized_percentile":{"value":0.94556555,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"38","issue":"Supplement_1","first_page":"i84","last_page":"i91"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9606999754905701,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9217000007629395,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.771580696105957},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.514963686466217},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5021955966949463},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.48205050826072693},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4452913701534271},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.42641186714172363},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1989130675792694},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12167629599571228}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.771580696105957},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.514963686466217},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5021955966949463},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.48205050826072693},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4452913701534271},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.42641186714172363},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1989130675792694},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12167629599571228}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002273","descriptor_name":"Carcinogens","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":true},{"descriptor_ui":"D002273","descriptor_name":"Carcinogens","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":true},{"descriptor_ui":"D002273","descriptor_name":"Carcinogens","qualifier_ui":"Q000633","qualifier_name":"toxicity","is_major_topic":true},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005544","descriptor_name":"Forecasting","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009153","descriptor_name":"Mutagens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009153","descriptor_name":"Mutagens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009153","descriptor_name":"Mutagens","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac266","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac266","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35758812","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35758812","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9235510","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9235510","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac266","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac266","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6299999952316284,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W226418965","https://openalex.org/W1965431569","https://openalex.org/W1975147762","https://openalex.org/W1977340881","https://openalex.org/W1978865111","https://openalex.org/W1988037271","https://openalex.org/W1988790447","https://openalex.org/W2020396120","https://openalex.org/W2060277733","https://openalex.org/W2066532920","https://openalex.org/W2078601176","https://openalex.org/W2081930493","https://openalex.org/W2116341502","https://openalex.org/W2128555720","https://openalex.org/W2172024804","https://openalex.org/W2200017991","https://openalex.org/W2269807470","https://openalex.org/W2287657248","https://openalex.org/W2313991614","https://openalex.org/W2396649694","https://openalex.org/W2412446857","https://openalex.org/W2612060048","https://openalex.org/W2791355014","https://openalex.org/W2908668946","https://openalex.org/W2910881983","https://openalex.org/W2966357564","https://openalex.org/W2981997745","https://openalex.org/W3007309629","https://openalex.org/W3093780683","https://openalex.org/W3124409690","https://openalex.org/W3147894994","https://openalex.org/W3158331815","https://openalex.org/W4225876201","https://openalex.org/W4302767053","https://openalex.org/W6609077672","https://openalex.org/W6643860709","https://openalex.org/W6669937732","https://openalex.org/W6688325169","https://openalex.org/W6737270517"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4313488044","https://openalex.org/W3209574120","https://openalex.org/W4312192474","https://openalex.org/W4210805261"],"abstract_inverted_index":{"The":[0],"code":[1],"and":[2],"data":[3],"underlying":[4],"this":[5],"article":[6],"are":[7],"available":[8],"on":[9],"github":[10],"at":[11],"https://github.com/bowang-lab/CONCERTO.":[12]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":8}],"updated_date":"2026-03-14T08:43:22.919905","created_date":"2025-10-10T00:00:00"}
