{"id":"https://openalex.org/W4225772891","doi":"https://doi.org/10.1093/bioinformatics/btac219","title":"Synthetic-to-real: instance segmentation of clinical cluster cells with unlabeled synthetic training","display_name":"Synthetic-to-real: instance segmentation of clinical cluster cells with unlabeled synthetic training","publication_year":2022,"publication_date":"2022-04-14","ids":{"openalex":"https://openalex.org/W4225772891","doi":"https://doi.org/10.1093/bioinformatics/btac219","pmid":"https://pubmed.ncbi.nlm.nih.gov/35758798"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac219","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac219","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1093/bioinformatics/btac219","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070105853","display_name":"Meng Zhao","orcid":"https://orcid.org/0000-0002-5060-9223"},"institutions":[{"id":"https://openalex.org/I136765683","display_name":"Tianjin University of Technology","ror":"https://ror.org/00zbe0w13","country_code":"CN","type":"education","lineage":["https://openalex.org/I136765683"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Meng Zhao","raw_affiliation_strings":["Engineering Research Center of Learning-Based Intelligent System (Ministry of Education), The Key Laboratory of Computer Vision and System (Ministry of Education), and the School of Computer Science and Engineering, Tianjin University of Technology , Tianjin 300384, China"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Learning-Based Intelligent System (Ministry of Education), The Key Laboratory of Computer Vision and System (Ministry of Education), and the School of Computer Science and Engineering, Tianjin University of Technology , Tianjin 300384, China","institution_ids":["https://openalex.org/I136765683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100358930","display_name":"Siyu Wang","orcid":"https://orcid.org/0009-0008-8726-5277"},"institutions":[{"id":"https://openalex.org/I136765683","display_name":"Tianjin University of Technology","ror":"https://ror.org/00zbe0w13","country_code":"CN","type":"education","lineage":["https://openalex.org/I136765683"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Siyu Wang","raw_affiliation_strings":["Engineering Research Center of Learning-Based Intelligent System (Ministry of Education), The Key Laboratory of Computer Vision and System (Ministry of Education), and the School of Computer Science and Engineering, Tianjin University of Technology , Tianjin 300384, China"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Learning-Based Intelligent System (Ministry of Education), The Key Laboratory of Computer Vision and System (Ministry of Education), and the School of Computer Science and Engineering, Tianjin University of Technology , Tianjin 300384, China","institution_ids":["https://openalex.org/I136765683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007910454","display_name":"Fan Shi","orcid":"https://orcid.org/0000-0003-2074-0228"},"institutions":[{"id":"https://openalex.org/I136765683","display_name":"Tianjin University of Technology","ror":"https://ror.org/00zbe0w13","country_code":"CN","type":"education","lineage":["https://openalex.org/I136765683"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fan Shi","raw_affiliation_strings":["Engineering Research Center of Learning-Based Intelligent System (Ministry of Education), The Key Laboratory of Computer Vision and System (Ministry of Education), and the School of Computer Science and Engineering, Tianjin University of Technology , Tianjin 300384, China"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Learning-Based Intelligent System (Ministry of Education), The Key Laboratory of Computer Vision and System (Ministry of Education), and the School of Computer Science and Engineering, Tianjin University of Technology , Tianjin 300384, China","institution_ids":["https://openalex.org/I136765683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100743861","display_name":"Chen Jia","orcid":"https://orcid.org/0000-0003-4829-7889"},"institutions":[{"id":"https://openalex.org/I136765683","display_name":"Tianjin University of Technology","ror":"https://ror.org/00zbe0w13","country_code":"CN","type":"education","lineage":["https://openalex.org/I136765683"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Jia","raw_affiliation_strings":["Engineering Research Center of Learning-Based Intelligent System (Ministry of Education), The Key Laboratory of Computer Vision and System (Ministry of Education), and the School of Computer Science and Engineering, Tianjin University of Technology , Tianjin 300384, China"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Learning-Based Intelligent System (Ministry of Education), The Key Laboratory of Computer Vision and System (Ministry of Education), and the School of Computer Science and Engineering, Tianjin University of Technology , Tianjin 300384, China","institution_ids":["https://openalex.org/I136765683"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030168652","display_name":"Xuguo Sun","orcid":"https://orcid.org/0000-0002-8017-5403"},"institutions":[{"id":"https://openalex.org/I5740404","display_name":"Tianjin Medical University","ror":"https://ror.org/02mh8wx89","country_code":"CN","type":"education","lineage":["https://openalex.org/I5740404"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuguo Sun","raw_affiliation_strings":["School of Medical Laboratory, Tianjin Medical University , Tianjin 300204, China"],"affiliations":[{"raw_affiliation_string":"School of Medical Laboratory, Tianjin Medical University , Tianjin 300204, China","institution_ids":["https://openalex.org/I5740404"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055627037","display_name":"Shengyong Chen","orcid":"https://orcid.org/0000-0002-6705-3831"},"institutions":[{"id":"https://openalex.org/I136765683","display_name":"Tianjin University of Technology","ror":"https://ror.org/00zbe0w13","country_code":"CN","type":"education","lineage":["https://openalex.org/I136765683"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengyong Chen","raw_affiliation_strings":["Engineering Research Center of Learning-Based Intelligent System (Ministry of Education), The Key Laboratory of Computer Vision and System (Ministry of Education), and the School of Computer Science and Engineering, Tianjin University of Technology , Tianjin 300384, China"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Learning-Based Intelligent System (Ministry of Education), The Key Laboratory of Computer Vision and System (Ministry of Education), and the School of Computer Science and Engineering, Tianjin University of Technology , Tianjin 300384, China","institution_ids":["https://openalex.org/I136765683"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5070105853"],"corresponding_institution_ids":["https://openalex.org/I136765683"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0384232,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"38","issue":"Supplement_1","first_page":"i53","last_page":"i59"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6660733222961426},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6546058654785156},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6045019626617432},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.5470857620239258},{"id":"https://openalex.org/keywords/synthetic-data","display_name":"Synthetic data","score":0.5238499641418457},{"id":"https://openalex.org/keywords/training-set","display_name":"Training set","score":0.45637547969818115},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4366624057292938},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37632134556770325},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.06567203998565674}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6660733222961426},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6546058654785156},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6045019626617432},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.5470857620239258},{"id":"https://openalex.org/C160920958","wikidata":"https://www.wikidata.org/wiki/Q7662746","display_name":"Synthetic data","level":2,"score":0.5238499641418457},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.45637547969818115},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4366624057292938},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37632134556770325},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.06567203998565674}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010996","descriptor_name":"Pleural Effusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010996","descriptor_name":"Pleural Effusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010996","descriptor_name":"Pleural Effusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac219","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac219","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35758798","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35758798","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9235483","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9235483","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac219","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac219","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/1","display_name":"No poverty","score":0.550000011920929}],"awards":[{"id":"https://openalex.org/G1592249304","display_name":null,"funder_award_id":"62020106004","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5370040448","display_name":null,"funder_award_id":"92048301","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6000966688","display_name":null,"funder_award_id":"61906133","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1835655851","https://openalex.org/W2095705004","https://openalex.org/W2098360374","https://openalex.org/W2123269393","https://openalex.org/W2512138407","https://openalex.org/W2617128058","https://openalex.org/W2725500196","https://openalex.org/W2944712585","https://openalex.org/W2974825848","https://openalex.org/W2981907326","https://openalex.org/W2989676862","https://openalex.org/W3082182183","https://openalex.org/W3084258660","https://openalex.org/W3112701542","https://openalex.org/W3128761933","https://openalex.org/W6674330103","https://openalex.org/W6769409190"],"related_works":["https://openalex.org/W4312659495","https://openalex.org/W3175965105","https://openalex.org/W4385366257","https://openalex.org/W3101007570","https://openalex.org/W4387910575","https://openalex.org/W3176425421","https://openalex.org/W3091312527","https://openalex.org/W1555087354","https://openalex.org/W4287865546","https://openalex.org/W3007306981"],"abstract_inverted_index":{"In":[0,60],"this":[1],"article,":[2],"we":[3,44,66,106],"propose":[4,45],"a":[5,18,40,68,91],"contour":[6,37,47],"constraint":[7,49],"instance":[8,30],"segmentation":[9,38,100,114],"framework":[10,25],"(CC":[11],"framework)":[12],"for":[13],"cluster":[14,19,32,71],"cells":[15,33],"based":[16],"on":[17],"cell":[20,72],"combination":[21],"enhancement":[22],"module.":[23],"The":[24,78],"can":[26,107],"accurately":[27],"locate":[28],"each":[29],"from":[31],"and":[34,54],"realize":[35],"high-precision":[36],"under":[39],"few":[41],"samples.":[42,77],"Specifically,":[43],"the":[46,64,83,103],"attention":[48],"module":[50],"to":[51,62],"alleviate":[52],"over-":[53],"under-segmentation":[55],"among":[56],"individual":[57],"cell-instance":[58],"boundaries.":[59],"addition,":[61],"evaluate":[63],"framework,":[65],"construct":[67],"pleural":[69],"effusion":[70],"dataset":[73],"including":[74],"197":[75],"high-quality":[76],"quantitative":[79],"results":[80],"show":[81],"that":[82,109],"numeric":[84],"result":[85],"of":[86],"APmask":[87],"is":[88],">":[89],"90%,":[90],"more":[92],"than":[93],"10%":[94],"increase":[95],"compared":[96],"with":[97],"state-of-the-art":[98],"semantic":[99],"algorithms.":[101],"From":[102],"qualitative":[104],"results,":[105],"observe":[108],"our":[110],"method":[111],"rarely":[112],"has":[113],"errors.":[115]},"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
