{"id":"https://openalex.org/W3202328286","doi":"https://doi.org/10.1093/bioinformatics/btac201","title":"Boost-RS: boosted embeddings for recommender systems and its application to enzyme\u2013substrate interaction prediction","display_name":"Boost-RS: boosted embeddings for recommender systems and its application to enzyme\u2013substrate interaction prediction","publication_year":2022,"publication_date":"2022-04-12","ids":{"openalex":"https://openalex.org/W3202328286","doi":"https://doi.org/10.1093/bioinformatics/btac201","mag":"3202328286","pmid":"https://pubmed.ncbi.nlm.nih.gov/35561204"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac201","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac201","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/10/2832/43705142/btac201.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/10/2832/43705142/btac201.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025349009","display_name":"Xinmeng Li","orcid":"https://orcid.org/0000-0002-6863-6078"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinmeng Li","raw_affiliation_strings":["Department of Computer Science, Tufts University , Medford, MA 02155, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Tufts University , Medford, MA 02155, USA","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100352448","display_name":"Liping Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Li-Ping Liu","raw_affiliation_strings":["Department of Computer Science, Tufts University , Medford, MA 02155, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Tufts University , Medford, MA 02155, USA","institution_ids":["https://openalex.org/I121934306"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048817284","display_name":"Soha Hassoun","orcid":"https://orcid.org/0000-0001-9477-2199"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Soha Hassoun","raw_affiliation_strings":["Department of Chemical and Biological Engineering, Tufts University , Medford, MA 02155, USA","Department of Computer Science, Tufts University , Medford, MA 02155, USA"],"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biological Engineering, Tufts University , Medford, MA 02155, USA","institution_ids":["https://openalex.org/I121934306"]},{"raw_affiliation_string":"Department of Computer Science, Tufts University , Medford, MA 02155, USA","institution_ids":["https://openalex.org/I121934306"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5048817284","https://openalex.org/A5100352448"],"corresponding_institution_ids":["https://openalex.org/I121934306"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.00217465,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"38","issue":"10","first_page":"2832","last_page":"2838"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9406999945640564,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7633092403411865},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.6542544960975647},{"id":"https://openalex.org/keywords/recommender-system","display_name":"Recommender system","score":0.6314232349395752},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.6268996596336365},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.51679527759552},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5009407997131348}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7633092403411865},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.6542544960975647},{"id":"https://openalex.org/C557471498","wikidata":"https://www.wikidata.org/wiki/Q554950","display_name":"Recommender system","level":2,"score":0.6314232349395752},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.6268996596336365},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.51679527759552},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5009407997131348}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac201","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac201","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/10/2832/43705142/btac201.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35561204","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35561204","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9113267","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9113267","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac201","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac201","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/10/2832/43705142/btac201.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3748230582","display_name":null,"funder_award_id":"1909536","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8180145166","display_name":null,"funder_award_id":"1908617","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3202328286.pdf","grobid_xml":"https://content.openalex.org/works/W3202328286.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1491459594","https://openalex.org/W1604281503","https://openalex.org/W2008420299","https://openalex.org/W2029348196","https://openalex.org/W2030342799","https://openalex.org/W2106053110","https://openalex.org/W2110256992","https://openalex.org/W2118265845","https://openalex.org/W2128312954","https://openalex.org/W2137245235","https://openalex.org/W2159482845","https://openalex.org/W2187089797","https://openalex.org/W2200017991","https://openalex.org/W2256553158","https://openalex.org/W2303048226","https://openalex.org/W2527836113","https://openalex.org/W2740920897","https://openalex.org/W2767719399","https://openalex.org/W2807942528","https://openalex.org/W2900981302","https://openalex.org/W2903063897","https://openalex.org/W2964121744","https://openalex.org/W2965024236","https://openalex.org/W2965209830","https://openalex.org/W3000043291","https://openalex.org/W3000763633","https://openalex.org/W3009246021","https://openalex.org/W3092319880","https://openalex.org/W3099619380","https://openalex.org/W3100278010","https://openalex.org/W3118699637","https://openalex.org/W3121826386","https://openalex.org/W3125712045","https://openalex.org/W3135416650","https://openalex.org/W3158146252","https://openalex.org/W3161775899","https://openalex.org/W4294216483","https://openalex.org/W6652428653","https://openalex.org/W6675751002","https://openalex.org/W6680451568","https://openalex.org/W6766448996"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W1968265719","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4313488044","https://openalex.org/W3209574120","https://openalex.org/W4312192474"],"abstract_inverted_index":{"A":[0],"Python":[1],"implementation":[2],"for":[3],"Boost-RS":[4],"is":[5,13],"provided":[6],"at":[7],"https://github.com/HassounLab/Boost-RS.":[8],"The":[9],"enzyme-substrate":[10],"interaction":[11],"data":[12],"available":[14],"from":[15],"the":[16],"KEGG":[17],"database":[18],"(https://www.genome.jp/kegg/).":[19]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
