{"id":"https://openalex.org/W4221083946","doi":"https://doi.org/10.1093/bioinformatics/btac184","title":"MetaSquare: an integrated metadatabase of 16S rRNA gene amplicon for microbiome taxonomic classification","display_name":"MetaSquare: an integrated metadatabase of 16S rRNA gene amplicon for microbiome taxonomic classification","publication_year":2022,"publication_date":"2022-03-22","ids":{"openalex":"https://openalex.org/W4221083946","doi":"https://doi.org/10.1093/bioinformatics/btac184","pmid":"https://pubmed.ncbi.nlm.nih.gov/35561196"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac184","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac184","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/10/2930/49009734/btac184.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/10/2930/49009734/btac184.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025015296","display_name":"Chun-Chieh Liao","orcid":null},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chun-Chieh Liao","raw_affiliation_strings":["Institute of Information Science , Academia Sinica, 115 Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science , Academia Sinica, 115 Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026892669","display_name":"Po-Ying Fu","orcid":"https://orcid.org/0000-0003-2536-7290"},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Po-Ying Fu","raw_affiliation_strings":["Washington University School of Medicine , St. Louis, MO 63110, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Washington University School of Medicine , St. Louis, MO 63110, USA","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047776698","display_name":"Chih\u2010Wei Huang","orcid":"https://orcid.org/0000-0002-2551-6199"},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chih-Wei Huang","raw_affiliation_strings":["Institute of Information Science , Academia Sinica, 115 Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science , Academia Sinica, 115 Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012178934","display_name":"Chia-Hsien Chuang","orcid":"https://orcid.org/0000-0002-3639-4684"},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chia-Hsien Chuang","raw_affiliation_strings":["Institute of Information Science , Academia Sinica, 115 Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Information Science , Academia Sinica, 115 Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009104622","display_name":"Yun Yen","orcid":"https://orcid.org/0000-0003-0815-412X"},"institutions":[{"id":"https://openalex.org/I47519274","display_name":"Taipei Medical University","ror":"https://ror.org/05031qk94","country_code":"TW","type":"education","lineage":["https://openalex.org/I47519274"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yun Yen","raw_affiliation_strings":["TMU Research Center of Cancer Translational Medicine, Taipei Medical University , 110 Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TMU Research Center of Cancer Translational Medicine, Taipei Medical University , 110 Taipei, Taiwan","institution_ids":["https://openalex.org/I47519274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029127365","display_name":"Chung\u2010Yen Lin","orcid":"https://orcid.org/0000-0002-4733-9488"},"institutions":[{"id":"https://openalex.org/I4210098366","display_name":"Institute of Information Science, Academia Sinica","ror":"https://ror.org/00z83z196","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210098366","https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Chung-Yen Lin","raw_affiliation_strings":["Institute of Information Science , Academia Sinica, 115 Taipei, Taiwan"],"raw_orcid":"https://orcid.org/0000-0002-4733-9488","affiliations":[{"raw_affiliation_string":"Institute of Information Science , Academia Sinica, 115 Taipei, Taiwan","institution_ids":["https://openalex.org/I4210098366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103359136","display_name":"Shu\u2010Hwa Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I47519274","display_name":"Taipei Medical University","ror":"https://ror.org/05031qk94","country_code":"TW","type":"education","lineage":["https://openalex.org/I47519274"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Shu-Hwa Chen","raw_affiliation_strings":["TMU Research Center of Cancer Translational Medicine, Taipei Medical University , 110 Taipei, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TMU Research Center of Cancer Translational Medicine, Taipei Medical University , 110 Taipei, Taiwan","institution_ids":["https://openalex.org/I47519274"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5029127365","https://openalex.org/A5103359136"],"corresponding_institution_ids":["https://openalex.org/I4210098366","https://openalex.org/I47519274"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.9233,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.71591623,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"38","issue":"10","first_page":"2930","last_page":"2931"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.544700026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.544700026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.1768999993801117,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.1177000030875206,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/amplicon","display_name":"Amplicon","score":0.8471681475639343},{"id":"https://openalex.org/keywords/16s-ribosomal-rna","display_name":"16S ribosomal RNA","score":0.7214496731758118},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5970353484153748},{"id":"https://openalex.org/keywords/ribosomal-rna","display_name":"Ribosomal RNA","score":0.5631389021873474},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5428956747055054},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.48831436038017273},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.47554895281791687},{"id":"https://openalex.org/keywords/amplicon-sequencing","display_name":"Amplicon sequencing","score":0.4446582794189453},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.44291484355926514},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4363030195236206},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.42052778601646423},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3517334461212158},{"id":"https://openalex.org/keywords/polymerase-chain-reaction","display_name":"Polymerase chain reaction","score":0.16049295663833618}],"concepts":[{"id":"https://openalex.org/C8185291","wikidata":"https://www.wikidata.org/wiki/Q2844457","display_name":"Amplicon","level":4,"score":0.8471681475639343},{"id":"https://openalex.org/C42062724","wikidata":"https://www.wikidata.org/wiki/Q1209205","display_name":"16S ribosomal RNA","level":3,"score":0.7214496731758118},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5970353484153748},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.5631389021873474},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5428956747055054},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.48831436038017273},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.47554895281791687},{"id":"https://openalex.org/C2993206177","wikidata":"https://www.wikidata.org/wiki/Q2844457","display_name":"Amplicon sequencing","level":4,"score":0.4446582794189453},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.44291484355926514},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4363030195236206},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.42052778601646423},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3517334461212158},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.16049295663833618}],"mesh":[{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btac184","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac184","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/10/2930/49009734/btac184.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35561196","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35561196","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9113242","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9113242","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:digitalcommons.wustl.edu:oa_4-1657","is_oa":true,"landing_page_url":"https://digitalcommons.wustl.edu/oa_4/662","pdf_url":null,"source":{"id":"https://openalex.org/S4306400764","display_name":"Digital Commons@Becker (Washington University School of Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I204465549","host_organization_name":"Washington University in St. Louis","host_organization_lineage":["https://openalex.org/I204465549"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2020-Current year OA Pubs","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac184","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac184","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/10/2930/49009734/btac184.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3098969157","display_name":null,"funder_award_id":"AS-GCS-109-07","funder_id":"https://openalex.org/F4320309618","funder_display_name":"Ministry of Science and Technology"},{"id":"https://openalex.org/G4033512843","display_name":null,"funder_award_id":"108-2321-B-037 -001","funder_id":"https://openalex.org/F4320309618","funder_display_name":"Ministry of Science and Technology"},{"id":"https://openalex.org/G737106015","display_name":null,"funder_award_id":"MOST 108-","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G7382660962","display_name":null,"funder_award_id":"AS-GCS-109-07","funder_id":"https://openalex.org/F4320322795","funder_display_name":"Ministry of Science and Technology, Taiwan"},{"id":"https://openalex.org/G964287314","display_name":null,"funder_award_id":"110-2314-B-001 -006","funder_id":"https://openalex.org/F4320309618","funder_display_name":"Ministry of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320309618","display_name":"Ministry of Science and Technology","ror":"https://ror.org/02b207r52"},{"id":"https://openalex.org/F4320321041","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784"},{"id":"https://openalex.org/F4320322795","display_name":"Ministry of Science and Technology, Taiwan","ror":"https://ror.org/02kv4zf79"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4221083946.pdf","grobid_xml":"https://content.openalex.org/works/W4221083946.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1988925586","https://openalex.org/W2078593395","https://openalex.org/W2151350595","https://openalex.org/W2579533542","https://openalex.org/W2910615673","https://openalex.org/W2963276645","https://openalex.org/W2985109597","https://openalex.org/W3008948755","https://openalex.org/W3028431867","https://openalex.org/W3094488209","https://openalex.org/W3125609739","https://openalex.org/W3182601255"],"related_works":["https://openalex.org/W2506843120","https://openalex.org/W2945285105","https://openalex.org/W4390154386","https://openalex.org/W2306179760","https://openalex.org/W4256272196","https://openalex.org/W4293598593","https://openalex.org/W2954242328","https://openalex.org/W2728043704","https://openalex.org/W4286615072","https://openalex.org/W2890961259"],"abstract_inverted_index":{"MOTIVATION:":[0],"Taxonomic":[1],"classification":[2,95],"of":[3,64,86],"16S":[4,18,50,79],"ribosomal":[5],"RNA":[6],"gene":[7],"amplicon":[8],"is":[9,76,84],"an":[10,69,77],"efficient":[11],"and":[12,26,61,92,100,109],"economic":[13],"approach":[14],"in":[15,29],"microbiome":[16],"analysis.":[17],"rRNA":[19,51,80],"sequence":[20,38,45,81],"databases":[21,60],"like":[22],"SILVA,":[23],"RDP,":[24],"EzBioCloud":[25],"HOMD":[27],"used":[28,59],"downstream":[30],"bioinformatic":[31],"pipelines":[32],"have":[33],"limitations":[34],"on":[35,43,97],"either":[36],"the":[37,41,49],"redundancy":[39],"or":[40],"delay":[42],"new":[44],"recruitment.":[46],"To":[47],"improve":[48],"gene-based":[52],"taxonomic":[53,94],"classification,":[54],"we":[55],"merged":[56],"these":[57],"widely":[58],"a":[62],"collection":[63],"novel":[65],"sequences":[66,91],"systemically":[67],"into":[68],"integrated":[70,78],"resource.":[71],"RESULTS:":[72],"MetaSquare":[73],"version":[74],"1.0":[75],"database.":[82],"It":[83],"composed":[85],"more":[87],"than":[88],"6":[89],"million":[90],"improves":[93],"resolution":[96],"both":[98],"long-read":[99],"short-read":[101],"methods.":[102],"AVAILABILITY":[103],"AND":[104],"IMPLEMENTATION:":[105],"Accessible":[106],"at":[107,117],"https://hub.docker.com/r/lsbnb/metasquare_db":[108],"https://github.com/lsbnb/MetaSquare.":[110],"SUPPLEMENTARY":[111],"INFORMATION:":[112],"Supplementary":[113],"data":[114],"are":[115],"available":[116],"Bioinformatics":[118],"online.":[119]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
