{"id":"https://openalex.org/W4220788456","doi":"https://doi.org/10.1093/bioinformatics/btac155","title":"BridgeDPI: a novel Graph Neural Network for predicting drug\u2013protein interactions","display_name":"BridgeDPI: a novel Graph Neural Network for predicting drug\u2013protein interactions","publication_year":2022,"publication_date":"2022-03-10","ids":{"openalex":"https://openalex.org/W4220788456","doi":"https://doi.org/10.1093/bioinformatics/btac155","pmid":"https://pubmed.ncbi.nlm.nih.gov/35274672"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac155","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac155","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020044791","display_name":"Yifan Wu","orcid":"https://orcid.org/0000-0002-2856-9835"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210128910","display_name":"Group Sense (China)","ror":"https://ror.org/036wd5777","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210128910"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yifan Wu","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , Changsha 410083, China","SenseTime Research , Shanghai 200233, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha 410083, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"SenseTime Research , Shanghai 200233, China","institution_ids":["https://openalex.org/I4210128910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100678967","display_name":"Min Gao","orcid":"https://orcid.org/0000-0003-3899-2933"},"institutions":[{"id":"https://openalex.org/I4210128910","display_name":"Group Sense (China)","ror":"https://ror.org/036wd5777","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210128910"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Gao","raw_affiliation_strings":["SenseTime Research , Shanghai 200233, China"],"affiliations":[{"raw_affiliation_string":"SenseTime Research , Shanghai 200233, China","institution_ids":["https://openalex.org/I4210128910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033885404","display_name":"Min Zeng","orcid":"https://orcid.org/0000-0002-1726-0955"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Zeng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , Changsha 410083, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100436650","display_name":"Jie Zhang","orcid":"https://orcid.org/0000-0001-8264-5950"},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210089783","display_name":"Shanghai Medical Information Center","ror":"https://ror.org/007wz9933","country_code":"CN","type":"other","lineage":["https://openalex.org/I4210089783"]},{"id":"https://openalex.org/I4210128910","display_name":"Group Sense (China)","ror":"https://ror.org/036wd5777","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210128910"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jie Zhang","raw_affiliation_strings":["Merck Advisory Committee for AI-enabled Health Solution , Shanghai 200126, China","Qing Yuan Research Institute, Shanghai Jiao Tong University , Shanghai 200240, China","SenseTime Research , Shanghai 200233, China"],"affiliations":[{"raw_affiliation_string":"Merck Advisory Committee for AI-enabled Health Solution , Shanghai 200126, China","institution_ids":["https://openalex.org/I4210089783"]},{"raw_affiliation_string":"Qing Yuan Research Institute, Shanghai Jiao Tong University , Shanghai 200240, China","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"SenseTime Research , Shanghai 200233, China","institution_ids":["https://openalex.org/I4210128910"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , Changsha 410083, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha 410083, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100436650","https://openalex.org/A5100719013"],"corresponding_institution_ids":["https://openalex.org/I139660479","https://openalex.org/I183067930","https://openalex.org/I4210089783","https://openalex.org/I4210128910"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":14.2747,"has_fulltext":false,"cited_by_count":104,"citation_normalized_percentile":{"value":0.99258149,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"38","issue":"9","first_page":"2571","last_page":"2578"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9757999777793884,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9057000279426575,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8022897243499756},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.575774610042572},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5372597575187683},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.5197065472602844},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5117528438568115},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5006542205810547},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4412664473056793},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42401623725891113},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41730719804763794},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.19409480690956116},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.16960984468460083},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.0859905481338501},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07677778601646423}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8022897243499756},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.575774610042572},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5372597575187683},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.5197065472602844},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5117528438568115},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5006542205810547},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4412664473056793},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42401623725891113},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41730719804763794},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.19409480690956116},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.16960984468460083},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0859905481338501},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07677778601646423},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btac155","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac155","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35274672","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35274672","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4043378463","display_name":null,"funder_award_id":"61832019","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W324102958","https://openalex.org/W846728699","https://openalex.org/W1968319881","https://openalex.org/W1975147762","https://openalex.org/W1988037271","https://openalex.org/W1993285168","https://openalex.org/W2024331611","https://openalex.org/W2039473152","https://openalex.org/W2095705004","https://openalex.org/W2106612397","https://openalex.org/W2107903949","https://openalex.org/W2126671570","https://openalex.org/W2139736926","https://openalex.org/W2148145769","https://openalex.org/W2148512505","https://openalex.org/W2166550586","https://openalex.org/W2167212630","https://openalex.org/W2170243504","https://openalex.org/W2170960297","https://openalex.org/W2204695023","https://openalex.org/W2412446857","https://openalex.org/W2551706664","https://openalex.org/W2753953057","https://openalex.org/W2770320302","https://openalex.org/W2807792492","https://openalex.org/W2860192827","https://openalex.org/W2887034469","https://openalex.org/W2952522777","https://openalex.org/W2955488150","https://openalex.org/W2969325194","https://openalex.org/W3001433048","https://openalex.org/W3005769002","https://openalex.org/W3005970824","https://openalex.org/W3012588029","https://openalex.org/W3014962324","https://openalex.org/W3015018920","https://openalex.org/W3015372266","https://openalex.org/W3019745511","https://openalex.org/W3028589594","https://openalex.org/W3067080207","https://openalex.org/W3096057929","https://openalex.org/W3096561213","https://openalex.org/W3113196149","https://openalex.org/W3128687311","https://openalex.org/W3151148247","https://openalex.org/W3161252167","https://openalex.org/W4205171481","https://openalex.org/W4295312788","https://openalex.org/W6674330103","https://openalex.org/W6752083957","https://openalex.org/W6765490709","https://openalex.org/W6766978945","https://openalex.org/W6775409355","https://openalex.org/W6804576115"],"related_works":["https://openalex.org/W2352440174","https://openalex.org/W2480711475","https://openalex.org/W4309440960","https://openalex.org/W2062168445","https://openalex.org/W2348940229","https://openalex.org/W2363046693","https://openalex.org/W2389491697","https://openalex.org/W4301044699","https://openalex.org/W2067476155","https://openalex.org/W2061997414"],"abstract_inverted_index":{"The":[0,10],"source":[1,11],"code":[2],"of":[3],"BridgeDPI":[4],"can":[5],"be":[6],"accessed":[7],"at":[8],"https://github.com/SenseTime-Knowledge-Mining/BridgeDPI.":[9],"data":[12],"used":[13],"in":[14],"this":[15],"study":[16],"is":[17],"available":[18],"on":[19],"the":[20,23,28,35],"https://github.com/IBM/InterpretableDTIP":[21],"(for":[22,27,34],"BindingDB":[24],"dataset),":[25,37],"https://github.com/masashitsubaki/CPI_prediction":[26],"C.ELEGANS":[29],"and":[30],"HUMAN)":[31],"datasets,":[32],"http://dude.docking.org/":[33],"DUD-E":[36],"repectively.":[38]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":36},{"year":2024,"cited_by_count":29},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":1}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
