{"id":"https://openalex.org/W4220985889","doi":"https://doi.org/10.1093/bioinformatics/btac154","title":"DeepREAL: a deep learning powered multi-scale modeling framework for predicting out-of-distribution ligand-induced GPCR activity","display_name":"DeepREAL: a deep learning powered multi-scale modeling framework for predicting out-of-distribution ligand-induced GPCR activity","publication_year":2022,"publication_date":"2022-03-10","ids":{"openalex":"https://openalex.org/W4220985889","doi":"https://doi.org/10.1093/bioinformatics/btac154","pmid":"https://pubmed.ncbi.nlm.nih.gov/35274689"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac154","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac154","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/9/2561/43481212/btac154.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/9/2561/43481212/btac154.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043728103","display_name":"Tian Cai","orcid":"https://orcid.org/0000-0002-9516-6489"},"institutions":[{"id":"https://openalex.org/I121847817","display_name":"The Graduate Center, CUNY","ror":"https://ror.org/00awd9g61","country_code":"US","type":"education","lineage":["https://openalex.org/I121847817"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tian Cai","raw_affiliation_strings":["Ph.D. Program in Computer Science, The Graduate Center, The City University of New York , New York, NY 10016, USA"],"affiliations":[{"raw_affiliation_string":"Ph.D. Program in Computer Science, The Graduate Center, The City University of New York , New York, NY 10016, USA","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I121847817"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009212722","display_name":"Kyra Alyssa Abbu","orcid":"https://orcid.org/0000-0001-9020-301X"},"institutions":[{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kyra Alyssa Abbu","raw_affiliation_strings":["Department of Computer Science, Hunter College, The City University of New York , New York, NY 10065, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Hunter College, The City University of New York , New York, NY 10065, USA","institution_ids":["https://openalex.org/I39694355","https://openalex.org/I174216632"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100355797","display_name":"Yang Liu","orcid":"https://orcid.org/0000-0002-1109-0756"},"institutions":[{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yang Liu","raw_affiliation_strings":["Department of Computer Science, Hunter College, The City University of New York , New York, NY 10065, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Hunter College, The City University of New York , New York, NY 10065, USA","institution_ids":["https://openalex.org/I39694355","https://openalex.org/I174216632"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066245750","display_name":"Lei Xie","orcid":"https://orcid.org/0000-0001-9051-2111"},"institutions":[{"id":"https://openalex.org/I121847817","display_name":"The Graduate Center, CUNY","ror":"https://ror.org/00awd9g61","country_code":"US","type":"education","lineage":["https://openalex.org/I121847817"]},{"id":"https://openalex.org/I174216632","display_name":"City University of New York","ror":"https://ror.org/00453a208","country_code":"US","type":"education","lineage":["https://openalex.org/I174216632"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I39694355","display_name":"Hunter College","ror":"https://ror.org/00g2xk477","country_code":"US","type":"education","lineage":["https://openalex.org/I39694355"]},{"id":"https://openalex.org/I4210097825","display_name":"MIND Research Institute","ror":"https://ror.org/00we1gw23","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210097825"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lei Xie","raw_affiliation_strings":["Department of Computer Science, Hunter College, The City University of New York , New York, NY 10065, USA","Helen and Robert Appel Alzheimer\u2019s Disease Research Institute, Feil Family Brain & Mind Research Institute, Weill Cornell Medicine, Cornell University , New York, NY 10021, USA","Ph.D. Program in Computer Science, The Graduate Center, The City University of New York , New York, NY 10016, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Hunter College, The City University of New York , New York, NY 10065, USA","institution_ids":["https://openalex.org/I39694355","https://openalex.org/I174216632"]},{"raw_affiliation_string":"Helen and Robert Appel Alzheimer\u2019s Disease Research Institute, Feil Family Brain & Mind Research Institute, Weill Cornell Medicine, Cornell University , New York, NY 10021, USA","institution_ids":["https://openalex.org/I4210097825","https://openalex.org/I205783295"]},{"raw_affiliation_string":"Ph.D. Program in Computer Science, The Graduate Center, The City University of New York , New York, NY 10016, USA","institution_ids":["https://openalex.org/I174216632","https://openalex.org/I121847817"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5066245750"],"corresponding_institution_ids":["https://openalex.org/I121847817","https://openalex.org/I174216632","https://openalex.org/I205783295","https://openalex.org/I39694355","https://openalex.org/I4210097825"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.3887,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.80249657,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"38","issue":"9","first_page":"2561","last_page":"2570"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9804999828338623,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7115011811256409},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6780378222465515},{"id":"https://openalex.org/keywords/g-protein-coupled-receptor","display_name":"G protein-coupled receptor","score":0.6059445738792419},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5056145191192627},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5023612976074219},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5004496574401855},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.46206340193748474},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4356321096420288},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4253201186656952},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3940151333808899},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3428456783294678},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.25277453660964966},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17399373650550842},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.11908090114593506}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7115011811256409},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6780378222465515},{"id":"https://openalex.org/C135285700","wikidata":"https://www.wikidata.org/wiki/Q38173","display_name":"G protein-coupled receptor","level":3,"score":0.6059445738792419},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5056145191192627},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5023612976074219},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5004496574401855},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.46206340193748474},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4356321096420288},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4253201186656952},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3940151333808899},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3428456783294678},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.25277453660964966},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17399373650550842},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.11908090114593506},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btac154","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac154","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/9/2561/43481212/btac154.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35274689","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35274689","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:academicworks.cuny.edu:hc_pubs-1803","is_oa":true,"landing_page_url":"https://academicworks.cuny.edu/hc_pubs/724","pdf_url":null,"source":{"id":"https://openalex.org/S4377196304","display_name":"CUNY Academic Works (City University of New York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I174216632","host_organization_name":"City University of New York","host_organization_lineage":["https://openalex.org/I174216632"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Publications and Research","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9048666","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9048666","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac154","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac154","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/9/2561/43481212/btac154.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4220985889.pdf","grobid_xml":"https://content.openalex.org/works/W4220985889.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1247408796","https://openalex.org/W1989353122","https://openalex.org/W2050264591","https://openalex.org/W2078123221","https://openalex.org/W2100257305","https://openalex.org/W2126671570","https://openalex.org/W2169815691","https://openalex.org/W2273267066","https://openalex.org/W2527836113","https://openalex.org/W2564702731","https://openalex.org/W2588796969","https://openalex.org/W2734368377","https://openalex.org/W2789816271","https://openalex.org/W2809216727","https://openalex.org/W2913363455","https://openalex.org/W2951433247","https://openalex.org/W2953799871","https://openalex.org/W2971227267","https://openalex.org/W2973039076","https://openalex.org/W2986115017","https://openalex.org/W3095583226","https://openalex.org/W3137581839","https://openalex.org/W3146944767","https://openalex.org/W3165599401","https://openalex.org/W3167852095","https://openalex.org/W3177828909","https://openalex.org/W3195509796","https://openalex.org/W4210483668","https://openalex.org/W6763868836","https://openalex.org/W6770410477"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W4321353415","https://openalex.org/W2130974462","https://openalex.org/W972276598","https://openalex.org/W2086519370","https://openalex.org/W2028665553","https://openalex.org/W2087343574","https://openalex.org/W2609050007","https://openalex.org/W1981292198","https://openalex.org/W1135792216"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4}],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2025-10-10T00:00:00"}
