{"id":"https://openalex.org/W4220918251","doi":"https://doi.org/10.1093/bioinformatics/btac145","title":"spatialGE: quantification and visualization of the tumor microenvironment heterogeneity using spatial transcriptomics","display_name":"spatialGE: quantification and visualization of the tumor microenvironment heterogeneity using spatial transcriptomics","publication_year":2022,"publication_date":"2022-03-07","ids":{"openalex":"https://openalex.org/W4220918251","doi":"https://doi.org/10.1093/bioinformatics/btac145","pmid":"https://pubmed.ncbi.nlm.nih.gov/35258565"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac145","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac145","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9890305","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082157049","display_name":"Oscar E. Ospina","orcid":"https://orcid.org/0000-0001-5986-4207"},"institutions":[{"id":"https://openalex.org/I3019308854","display_name":"Moffitt Cancer Center","ror":"https://ror.org/01xf75524","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I3019308854"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oscar E Ospina","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Moffitt Cancer Center , Tampa, FL 33612, USA"],"raw_orcid":"https://orcid.org/0000-0001-5986-4207","affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Moffitt Cancer Center , Tampa, FL 33612, USA","institution_ids":["https://openalex.org/I3019308854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102743438","display_name":"Christopher M. Wilson","orcid":"https://orcid.org/0000-0002-2549-2908"},"institutions":[{"id":"https://openalex.org/I3019308854","display_name":"Moffitt Cancer Center","ror":"https://ror.org/01xf75524","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I3019308854"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher M Wilson","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Moffitt Cancer Center , Tampa, FL 33612, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Moffitt Cancer Center , Tampa, FL 33612, USA","institution_ids":["https://openalex.org/I3019308854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034494533","display_name":"Alex C. Soupir","orcid":"https://orcid.org/0000-0003-1251-9179"},"institutions":[{"id":"https://openalex.org/I3019308854","display_name":"Moffitt Cancer Center","ror":"https://ror.org/01xf75524","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I3019308854"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alex C Soupir","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Moffitt Cancer Center , Tampa, FL 33612, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Moffitt Cancer Center , Tampa, FL 33612, USA","institution_ids":["https://openalex.org/I3019308854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035616597","display_name":"Anders Berglund","orcid":"https://orcid.org/0000-0002-0393-3530"},"institutions":[{"id":"https://openalex.org/I3019308854","display_name":"Moffitt Cancer Center","ror":"https://ror.org/01xf75524","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I3019308854"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anders Berglund","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Moffitt Cancer Center , Tampa, FL 33612, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Moffitt Cancer Center , Tampa, FL 33612, USA","institution_ids":["https://openalex.org/I3019308854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073520964","display_name":"Inna Smalley","orcid":"https://orcid.org/0000-0002-6796-9145"},"institutions":[{"id":"https://openalex.org/I3019308854","display_name":"Moffitt Cancer Center","ror":"https://ror.org/01xf75524","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I3019308854"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Inna Smalley","raw_affiliation_strings":["Department of Tumor Biology, Moffitt Cancer Center , Tampa, FL 33612, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Tumor Biology, Moffitt Cancer Center , Tampa, FL 33612, USA","institution_ids":["https://openalex.org/I3019308854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038554310","display_name":"Kenneth Y. Tsai","orcid":"https://orcid.org/0000-0001-5325-212X"},"institutions":[{"id":"https://openalex.org/I3019308854","display_name":"Moffitt Cancer Center","ror":"https://ror.org/01xf75524","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I3019308854"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenneth Y Tsai","raw_affiliation_strings":["Department of Anatomic Pathology, Moffitt Cancer Center , Tampa, FL 33612, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Anatomic Pathology, Moffitt Cancer Center , Tampa, FL 33612, USA","institution_ids":["https://openalex.org/I3019308854"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004055647","display_name":"Brooke L. Fridley","orcid":"https://orcid.org/0000-0001-7739-7956"},"institutions":[{"id":"https://openalex.org/I3019308854","display_name":"Moffitt Cancer Center","ror":"https://ror.org/01xf75524","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I3019308854"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Brooke L Fridley","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Moffitt Cancer Center , Tampa, FL 33612, USA"],"raw_orcid":"https://orcid.org/0000-0001-7739-7956","affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Moffitt Cancer Center , Tampa, FL 33612, USA","institution_ids":["https://openalex.org/I3019308854"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5004055647"],"corresponding_institution_ids":["https://openalex.org/I3019308854"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.0318,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.92510243,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"38","issue":"9","first_page":"2645","last_page":"2647"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9650999903678894,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9650999903678894,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.005200000014156103,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10158","display_name":"Cancer Immunotherapy and Biomarkers","score":0.004399999976158142,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7049833536148071},{"id":"https://openalex.org/keywords/tumor-heterogeneity","display_name":"Tumor heterogeneity","score":0.6024035811424255},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5215242505073547},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5142052173614502},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4918324947357178},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.48746418952941895},{"id":"https://openalex.org/keywords/deconvolution","display_name":"Deconvolution","score":0.4826796352863312},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4415540099143982},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42569872736930847},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3904663324356079},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.34535253047943115},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32573187351226807},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.2238900363445282},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1741497814655304},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16150251030921936},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.1530536413192749},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13294717669487},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.09287095069885254}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7049833536148071},{"id":"https://openalex.org/C3018028425","wikidata":"https://www.wikidata.org/wiki/Q15917291","display_name":"Tumor heterogeneity","level":3,"score":0.6024035811424255},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5215242505073547},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5142052173614502},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4918324947357178},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.48746418952941895},{"id":"https://openalex.org/C174576160","wikidata":"https://www.wikidata.org/wiki/Q1183700","display_name":"Deconvolution","level":2,"score":0.4826796352863312},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4415540099143982},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42569872736930847},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3904663324356079},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.34535253047943115},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32573187351226807},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.2238900363445282},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1741497814655304},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16150251030921936},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.1530536413192749},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13294717669487},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.09287095069885254},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.0},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac145","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac145","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35258565","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35258565","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9890305","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9890305","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:9890305","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9890305","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1384083892","display_name":null,"funder_award_id":"T32-CA233399","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2191540582","display_name":null,"funder_award_id":"R00-CA226679","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6958627566","display_name":null,"funder_award_id":"P30-CA076292","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W2052611179","https://openalex.org/W2112727616","https://openalex.org/W2130430382","https://openalex.org/W2137526110","https://openalex.org/W2399767476","https://openalex.org/W2519132385","https://openalex.org/W2604408404","https://openalex.org/W2889453805","https://openalex.org/W2952001873","https://openalex.org/W2994000519","https://openalex.org/W3001833132","https://openalex.org/W3043793790","https://openalex.org/W3048017942","https://openalex.org/W3086286834","https://openalex.org/W3108118546","https://openalex.org/W3120342826","https://openalex.org/W3122544311","https://openalex.org/W3134482219","https://openalex.org/W3164692211","https://openalex.org/W3165120573","https://openalex.org/W4231713205","https://openalex.org/W6713280873"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W4250106855","https://openalex.org/W2037261263","https://openalex.org/W3149087629","https://openalex.org/W2358755282","https://openalex.org/W4231036715"],"abstract_inverted_index":{"SUMMARY:":[0],"Spatially":[1],"resolved":[2],"transcriptomics":[3],"promises":[4],"to":[5,22,82,103],"increase":[6],"our":[7],"understanding":[8],"of":[9,29,50],"the":[10,26,30,51,105,126,130],"tumor":[11,31,52],"microenvironment":[12,53],"and":[13,17,32,48,72,85,95],"improve":[14],"cancer":[15],"prognosis":[16],"therapies.":[18],"Nonetheless,":[19],"analytical":[20],"methods":[21],"explore":[23],"associations":[24],"between":[25],"spatial":[27,59],"heterogeneity":[28,54,60],"clinical":[33,67],"data":[34,80,84,118,136],"are":[35,97,137],"not":[36],"available.":[37],"Hence,":[38],"we":[39],"have":[40],"developed":[41],"spatialGE,":[42],"a":[43,78],"software":[44],"that":[45,62],"provides":[46],"visualizations":[47],"quantification":[49],"through":[55],"gene":[56],"expression":[57],"surfaces,":[58],"statistics":[61],"can":[63],"be":[64],"compared":[65],"against":[66],"information,":[68],"spot-level":[69],"cell":[70],"deconvolution":[71],"spatially":[73],"informed":[74],"clustering,":[75],"all":[76],"using":[77],"new":[79],"object":[81],"store":[83],"resulting":[86],"analyses":[87,106],"simultaneously.":[88],"AVAILABILITY":[89],"AND":[90],"IMPLEMENTATION:":[91],"The":[92,115],"R":[93],"package":[94],"tutorial/vignette":[96],"available":[98,111,124,128,138],"at":[99,139],"https://github.com/FridleyLab/spatialGE.":[100],"A":[101],"script":[102],"reproduce":[104],"in":[107,112,120],"this":[108],"manuscript":[109],"is":[110],"Supplementary":[113,135],"information.":[114],"Thrane":[116],"study":[117],"included":[119],"spatialGE":[121],"was":[122],"made":[123],"from":[125,129],"public":[127],"website":[131],"https://www.spatialresearch.org/resources-published-datasets/doi-10-1158-0008-5472-can-18-0747/.":[132],"SUPPLEMENTARY":[133],"INFORMATION:":[134],"Bioinformatics":[140],"online.":[141]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
