{"id":"https://openalex.org/W4214811981","doi":"https://doi.org/10.1093/bioinformatics/btac132","title":"MultiBaC: an R package to remove batch effects in multi-omic experiments","display_name":"MultiBaC: an R package to remove batch effects in multi-omic experiments","publication_year":2022,"publication_date":"2022-03-01","ids":{"openalex":"https://openalex.org/W4214811981","doi":"https://doi.org/10.1093/bioinformatics/btac132","pmid":"https://pubmed.ncbi.nlm.nih.gov/35238331"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac132","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac132","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/9/2657/43480935/btac132.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/9/2657/43480935/btac132.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075305835","display_name":"Manuel Ugidos","orcid":"https://orcid.org/0000-0001-5710-938X"},"institutions":[{"id":"https://openalex.org/I4210148788","display_name":"Instituto de Biomedicina de Valencia","ror":"https://ror.org/05pq8vh42","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210148788"]},{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Manuel Ugidos","raw_affiliation_strings":["Gene Expression and RNA Metabolism Laboratory, Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Cient\u00edficas , Valencia 46010, Spain","Multivariate Statistical Engineering Group, Department of Applied Statistics, Operations Research and Quality, Universitat Polit\u00e8cnica de Val\u00e8ncia , Valencia 46022, Spain"],"affiliations":[{"raw_affiliation_string":"Gene Expression and RNA Metabolism Laboratory, Instituto de Biomedicina de Valencia, Consejo Superior de Investigaciones Cient\u00edficas , Valencia 46010, Spain","institution_ids":["https://openalex.org/I4210148788"]},{"raw_affiliation_string":"Multivariate Statistical Engineering Group, Department of Applied Statistics, Operations Research and Quality, Universitat Polit\u00e8cnica de Val\u00e8ncia , Valencia 46022, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007029827","display_name":"Mar\u00eda Jos\u00e9 Nueda","orcid":"https://orcid.org/0000-0002-1666-4771"},"institutions":[{"id":"https://openalex.org/I130194489","display_name":"University of Alicante","ror":"https://ror.org/05t8bcz72","country_code":"ES","type":"education","lineage":["https://openalex.org/I130194489"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Mar\u00eda Jos\u00e9 Nueda","raw_affiliation_strings":["Department of Mathematics, Universidad de Alicante , Alicante 03690, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Universidad de Alicante , Alicante 03690, Spain","institution_ids":["https://openalex.org/I130194489"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078514959","display_name":"J.M. Prats-Montalb\u00e1n","orcid":"https://orcid.org/0000-0001-6294-4486"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 M Prats-Montalb\u00e1n","raw_affiliation_strings":["Multivariate Statistical Engineering Group, Department of Applied Statistics, Operations Research and Quality, Universitat Polit\u00e8cnica de Val\u00e8ncia , Valencia 46022, Spain"],"affiliations":[{"raw_affiliation_string":"Multivariate Statistical Engineering Group, Department of Applied Statistics, Operations Research and Quality, Universitat Polit\u00e8cnica de Val\u00e8ncia , Valencia 46022, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038963177","display_name":"Alberto Ferrer","orcid":"https://orcid.org/0000-0001-7244-5947"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alberto Ferrer","raw_affiliation_strings":["Multivariate Statistical Engineering Group, Department of Applied Statistics, Operations Research and Quality, Universitat Polit\u00e8cnica de Val\u00e8ncia , Valencia 46022, Spain"],"affiliations":[{"raw_affiliation_string":"Multivariate Statistical Engineering Group, Department of Applied Statistics, Operations Research and Quality, Universitat Polit\u00e8cnica de Val\u00e8ncia , Valencia 46022, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002377126","display_name":"Ana Conesa","orcid":"https://orcid.org/0000-0001-9597-311X"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Ana Conesa","raw_affiliation_strings":["Institute for Integrative Systems Biology, Consejo Superior de Investigaciones Cient\u00edficas , Valencia 46980, Spain"],"affiliations":[{"raw_affiliation_string":"Institute for Integrative Systems Biology, Consejo Superior de Investigaciones Cient\u00edficas , Valencia 46980, Spain","institution_ids":["https://openalex.org/I4210152685","https://openalex.org/I134820265"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091413224","display_name":"Sonia Tarazona","orcid":"https://orcid.org/0000-0001-5346-1407"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Sonia Tarazona","raw_affiliation_strings":["Multivariate Statistical Engineering Group, Department of Applied Statistics, Operations Research and Quality, Universitat Polit\u00e8cnica de Val\u00e8ncia , Valencia 46022, Spain"],"affiliations":[{"raw_affiliation_string":"Multivariate Statistical Engineering Group, Department of Applied Statistics, Operations Research and Quality, Universitat Polit\u00e8cnica de Val\u00e8ncia , Valencia 46022, Spain","institution_ids":["https://openalex.org/I60053951"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5002377126","https://openalex.org/A5091413224"],"corresponding_institution_ids":["https://openalex.org/I134820265","https://openalex.org/I4210152685","https://openalex.org/I60053951"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.0798,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.87431234,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"38","issue":"9","first_page":"2657","last_page":"2658"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9432793855667114},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7220960259437561},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.5151728391647339},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5115464925765991},{"id":"https://openalex.org/keywords/batch-processing","display_name":"Batch processing","score":0.44270896911621094},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.42355233430862427},{"id":"https://openalex.org/keywords/notice","display_name":"Notice","score":0.4124469757080078},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09342160820960999}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9432793855667114},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7220960259437561},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.5151728391647339},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5115464925765991},{"id":"https://openalex.org/C172658912","wikidata":"https://www.wikidata.org/wiki/Q661613","display_name":"Batch processing","level":2,"score":0.44270896911621094},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.42355233430862427},{"id":"https://openalex.org/C2779913896","wikidata":"https://www.wikidata.org/wiki/Q7063001","display_name":"Notice","level":2,"score":0.4124469757080078},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09342160820960999},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btac132","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac132","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/9/2657/43480935/btac132.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35238331","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35238331","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/271114","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/271114","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},{"id":"pmh:oai:digital.csic.es:10261/330903","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/330903","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},{"id":"pmh:oai:pubmedcentral.nih.gov:9048667","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9048667","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:riunet.upv.es:10251/192509","is_oa":true,"landing_page_url":"http://hdl.handle.net/10251/192509","pdf_url":null,"source":{"id":"https://openalex.org/S4306401500","display_name":"RiuNet (Politechnical University of Valencia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60053951","host_organization_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I60053951"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:rua.ua.es:10045/122343","is_oa":true,"landing_page_url":"http://hdl.handle.net/10045/122343","pdf_url":null,"source":{"id":"https://openalex.org/S4306400416","display_name":"Repositorio Institucional de la Universidad de Alicante (Universidad de Alicante)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I130194489","host_organization_name":"University of Alicante","host_organization_lineage":["https://openalex.org/I130194489"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac132","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac132","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/9/2657/43480935/btac132.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4214811981.pdf","grobid_xml":"https://content.openalex.org/works/W4214811981.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W2039521726","https://openalex.org/W2060002238","https://openalex.org/W2127274965","https://openalex.org/W2127284906","https://openalex.org/W2146512944","https://openalex.org/W2169353806","https://openalex.org/W3009315430","https://openalex.org/W6678907343"],"related_works":["https://openalex.org/W2982252354","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W2161868542","https://openalex.org/W2140163842","https://openalex.org/W3156537409","https://openalex.org/W2747931568","https://openalex.org/W2133055377","https://openalex.org/W2921090651","https://openalex.org/W2287365612"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":2}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
