{"id":"https://openalex.org/W4213288235","doi":"https://doi.org/10.1093/bioinformatics/btac098","title":"mzMD: visualization-oriented MS data storage and retrieval","display_name":"mzMD: visualization-oriented MS data storage and retrieval","publication_year":2022,"publication_date":"2022-02-14","ids":{"openalex":"https://openalex.org/W4213288235","doi":"https://doi.org/10.1093/bioinformatics/btac098","pmid":"https://pubmed.ncbi.nlm.nih.gov/35171986"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac098","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac098","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028637643","display_name":"Runmin Yang","orcid":"https://orcid.org/0000-0002-7141-7749"},"institutions":[{"id":"https://openalex.org/I80143920","display_name":"Shandong University of Science and Technology","ror":"https://ror.org/04gtjhw98","country_code":"CN","type":"education","lineage":["https://openalex.org/I80143920"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Runmin Yang","raw_affiliation_strings":["School of Computer Science and Technology, Shandong University , Qingdao 266237, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Shandong University , Qingdao 266237, China","institution_ids":["https://openalex.org/I80143920"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100631336","display_name":"Jingjing Ma","orcid":"https://orcid.org/0000-0001-9011-3372"},"institutions":[{"id":"https://openalex.org/I80143920","display_name":"Shandong University of Science and Technology","ror":"https://ror.org/04gtjhw98","country_code":"CN","type":"education","lineage":["https://openalex.org/I80143920"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingjing Ma","raw_affiliation_strings":["School of Computer Science and Technology, Shandong University , Qingdao 266237, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Shandong University , Qingdao 266237, China","institution_ids":["https://openalex.org/I80143920"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101745570","display_name":"Shu Zhang","orcid":"https://orcid.org/0000-0003-1977-0446"},"institutions":[{"id":"https://openalex.org/I80143920","display_name":"Shandong University of Science and Technology","ror":"https://ror.org/04gtjhw98","country_code":"CN","type":"education","lineage":["https://openalex.org/I80143920"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shu Zhang","raw_affiliation_strings":["School of Computer Science and Technology, Shandong University , Qingdao 266237, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Shandong University , Qingdao 266237, China","institution_ids":["https://openalex.org/I80143920"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107092573","display_name":"Yu Zheng","orcid":"https://orcid.org/0000-0003-0757-4210"},"institutions":[{"id":"https://openalex.org/I80143920","display_name":"Shandong University of Science and Technology","ror":"https://ror.org/04gtjhw98","country_code":"CN","type":"education","lineage":["https://openalex.org/I80143920"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Zheng","raw_affiliation_strings":["School of Computer Science and Technology, Shandong University , Qingdao 266237, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Shandong University , Qingdao 266237, China","institution_ids":["https://openalex.org/I80143920"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065315257","display_name":"Lusheng Wang","orcid":"https://orcid.org/0000-0002-4344-8791"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]},{"id":"https://openalex.org/I4210105229","display_name":"City University of Hong Kong, Shenzhen Research Institute","ror":"https://ror.org/00xc0ma20","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210105229"]}],"countries":["CN","HK"],"is_corresponding":true,"raw_author_name":"Lusheng Wang","raw_affiliation_strings":["City University of Hong Kong Shenzhen Research Institute , Shenzhen 518057, China","Department of Computer Science, City University of Hong Kong , Hong Kong, China"],"raw_orcid":"https://orcid.org/0000-0002-4344-8791","affiliations":[{"raw_affiliation_string":"City University of Hong Kong Shenzhen Research Institute , Shenzhen 518057, China","institution_ids":["https://openalex.org/I168719708","https://openalex.org/I4210105229"]},{"raw_affiliation_string":"Department of Computer Science, City University of Hong Kong , Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101769221","display_name":"Daming Zhu","orcid":"https://orcid.org/0000-0001-9395-7247"},"institutions":[{"id":"https://openalex.org/I80143920","display_name":"Shandong University of Science and Technology","ror":"https://ror.org/04gtjhw98","country_code":"CN","type":"education","lineage":["https://openalex.org/I80143920"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Daming Zhu","raw_affiliation_strings":["School of Computer Science and Technology, Shandong University , Qingdao 266237, China"],"raw_orcid":"https://orcid.org/0000-0001-9395-7247","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Shandong University , Qingdao 266237, China","institution_ids":["https://openalex.org/I80143920"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065315257","https://openalex.org/A5101769221"],"corresponding_institution_ids":["https://openalex.org/I168719708","https://openalex.org/I4210105229","https://openalex.org/I80143920"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0979,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.32264685,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"38","issue":"8","first_page":"2333","last_page":"2340"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.4228000044822693,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.4228000044822693,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.04569999873638153,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.03550000116229057,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.728232741355896},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.638822078704834},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4355441927909851},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3212753236293793},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3135256767272949}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.728232741355896},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.638822078704834},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4355441927909851},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3212753236293793},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3135256767272949}],"mesh":[{"descriptor_ui":"D000068598","descriptor_name":"Data Accuracy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000068598","descriptor_name":"Data Accuracy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000068598","descriptor_name":"Data Accuracy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btac098","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac098","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35171986","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35171986","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1154648086","display_name":"\u5173\u4e8e\u67d0\u4e9b\u6811\u7684\u95ee\u9898\uff0c\u56fe\u7684\u5e73\u5747\u5212\u5206\u95ee\u9898\uff0c\u53ca\u86cb\u767d\u8d28\u53d8\u4f53\u8d28\u91cf\u56fe\u7684\u7b97\u6cd5\u8bbe\u8ba1","funder_award_id":"61972329","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1729077721","display_name":null,"funder_award_id":"61732009","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1986171504","https://openalex.org/W2023096047","https://openalex.org/W2042510382","https://openalex.org/W2061936826","https://openalex.org/W2069044925","https://openalex.org/W2074161895","https://openalex.org/W2081465448","https://openalex.org/W2110057023","https://openalex.org/W2117300383","https://openalex.org/W2146103026","https://openalex.org/W2146482199","https://openalex.org/W2437599638","https://openalex.org/W2462197865","https://openalex.org/W2743289556","https://openalex.org/W2770942940","https://openalex.org/W2909924790","https://openalex.org/W2948104062","https://openalex.org/W3088700323","https://openalex.org/W4256691599"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2068608913","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W3124914020","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829"],"abstract_inverted_index":{"MOTIVATION:":[0],"Drawing":[1],"peaks":[2,30,47],"in":[3,15,31,37,48,64,144],"a":[4,32,38,87,102,106,115,121],"data":[5,17,33,50,117,129,147,154,199],"window":[6,34,40,130,148],"of":[7,45,72,79,91,101,110,114,128,142,153,165,172,183],"an":[8,25,53,95],"MS":[9,16,26,81,92,136],"dataset":[10,27],"happens":[11],"at":[12,194,202],"all":[13,46],"time":[14],"visualization":[18],"applications.":[19],"This":[20],"asks":[21],"to":[22,60,97,124],"retrieve":[23],"from":[24],"some":[28],"selected":[29,111],"whose":[35,156],"image":[36],"display":[39],"reflects":[41],"the":[42,49,68,76,80,126,139,168],"visual":[43],"feature":[44],"window.":[51,118],"If":[52],"algorithm":[54,96],"for":[55,105],"this":[56,99],"purpose":[57],"is":[58,74,167,179,191],"asked":[59],"output":[61],"high-quality":[62,146],"solutions":[63],"real":[65,135],"time,":[66],"then":[67],"most":[69],"fundamental":[70],"dependence":[71],"it":[73],"on":[75,134],"storage":[77,89,103],"format":[78,90,100],"dataset.":[82],"RESULTS:":[83],"We":[84,119],"present":[85],"mzMD,":[86],"new":[88],"datasets":[93,137],"and":[94],"query":[98,163,176],"system":[104],"summary":[107],"(a":[108],"set":[109],"representative":[112],"peaks)":[113],"given":[116],"propose":[120],"criterion":[122],"Q-score":[123,157],"examine":[125],"quality":[127],"summaries.":[131,149],"Experimental":[132],"statistics":[133],"verified":[138],"high":[140],"speed":[141,164,177],"mzMD":[143,150,166],"retrieving":[145],"reported":[151],"summaries":[152],"windows":[155],"outperforms":[158],"those":[159],"mzTree":[160,173],"reported.":[161],"The":[162,188],"same":[169],"as":[170],"that":[171,182],"whereas":[174],"its":[175],"stability":[178],"better":[180],"than":[181],"mzTree.":[184],"AVAILABILITY":[185],"AND":[186],"IMPLEMENTATION:":[187],"source":[189],"code":[190],"freely":[192],"available":[193,201],"https://github.com/yrm9837/mzMD-java.":[195],"SUPPLEMENTARY":[196],"INFORMATION:":[197],"Supplementary":[198],"are":[200],"Bioinformatics":[203],"online.":[204]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
