{"id":"https://openalex.org/W4210870577","doi":"https://doi.org/10.1093/bioinformatics/btac088","title":"Multi-level attention graph neural network based on co-expression gene modules for disease diagnosis and prognosis","display_name":"Multi-level attention graph neural network based on co-expression gene modules for disease diagnosis and prognosis","publication_year":2022,"publication_date":"2022-02-09","ids":{"openalex":"https://openalex.org/W4210870577","doi":"https://doi.org/10.1093/bioinformatics/btac088","pmid":"https://pubmed.ncbi.nlm.nih.gov/35157021"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac088","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac088","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080589649","display_name":"Xiaohan Xing","orcid":"https://orcid.org/0000-0002-9992-3387"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]}],"countries":["CN","HK"],"is_corresponding":true,"raw_author_name":"Xiaohan Xing","raw_affiliation_strings":["AI Lab, Tencent , Shenzhen 518000, China","Department of Electronic Engineering, The Chinese University of Hong Kong , Shatin, Hong Kong 999077, China"],"affiliations":[{"raw_affiliation_string":"AI Lab, Tencent , Shenzhen 518000, China","institution_ids":["https://openalex.org/I2250653659"]},{"raw_affiliation_string":"Department of Electronic Engineering, The Chinese University of Hong Kong , Shatin, Hong Kong 999077, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089823903","display_name":"Fan Yang","orcid":"https://orcid.org/0000-0002-1245-1197"},"institutions":[{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fan Yang","raw_affiliation_strings":["AI Lab, Tencent , Shenzhen 518000, China"],"affiliations":[{"raw_affiliation_string":"AI Lab, Tencent , Shenzhen 518000, China","institution_ids":["https://openalex.org/I2250653659"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100455146","display_name":"Hang Li","orcid":"https://orcid.org/0000-0002-8486-6631"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hang Li","raw_affiliation_strings":["AI Lab, Tencent , Shenzhen 518000, China","School of Informatics, Xiamen University , Xiamen 361005, China"],"affiliations":[{"raw_affiliation_string":"AI Lab, Tencent , Shenzhen 518000, China","institution_ids":["https://openalex.org/I2250653659"]},{"raw_affiliation_string":"School of Informatics, Xiamen University , Xiamen 361005, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100433042","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0001-5579-7094"},"institutions":[{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["AI Lab, Tencent , Shenzhen 518000, China"],"affiliations":[{"raw_affiliation_string":"AI Lab, Tencent , Shenzhen 518000, China","institution_ids":["https://openalex.org/I2250653659"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054792004","display_name":"Yu Zhao","orcid":"https://orcid.org/0000-0003-3629-471X"},"institutions":[{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Zhao","raw_affiliation_strings":["AI Lab, Tencent , Shenzhen 518000, China"],"affiliations":[{"raw_affiliation_string":"AI Lab, Tencent , Shenzhen 518000, China","institution_ids":["https://openalex.org/I2250653659"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103072772","display_name":"Mingxuan Gao","orcid":"https://orcid.org/0000-0002-6619-6507"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingxuan Gao","raw_affiliation_strings":["AI Lab, Tencent , Shenzhen 518000, China","School of Informatics, Xiamen University , Xiamen 361005, China"],"affiliations":[{"raw_affiliation_string":"AI Lab, Tencent , Shenzhen 518000, China","institution_ids":["https://openalex.org/I2250653659"]},{"raw_affiliation_string":"School of Informatics, Xiamen University , Xiamen 361005, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068865316","display_name":"Junzhou Huang","orcid":"https://orcid.org/0000-0002-9548-1227"},"institutions":[{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junzhou Huang","raw_affiliation_strings":["AI Lab, Tencent , Shenzhen 518000, China"],"affiliations":[{"raw_affiliation_string":"AI Lab, Tencent , Shenzhen 518000, China","institution_ids":["https://openalex.org/I2250653659"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100695406","display_name":"Jianhua Yao","orcid":"https://orcid.org/0000-0001-9157-9596"},"institutions":[{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianhua Yao","raw_affiliation_strings":["AI Lab, Tencent , Shenzhen 518000, China"],"affiliations":[{"raw_affiliation_string":"AI Lab, Tencent , Shenzhen 518000, China","institution_ids":["https://openalex.org/I2250653659"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5080589649"],"corresponding_institution_ids":["https://openalex.org/I177725633","https://openalex.org/I2250653659"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":4.0156,"has_fulltext":false,"cited_by_count":53,"citation_normalized_percentile":{"value":0.94624277,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"38","issue":"8","first_page":"2178","last_page":"2186"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5603024363517761},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5409340262413025},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5394317507743835},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5346628427505493},{"id":"https://openalex.org/keywords/gene-co-expression-network","display_name":"Gene co-expression network","score":0.43584054708480835},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3621792793273926},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34054645895957947},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3300624191761017},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.327064573764801},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.30128413438796997},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20704585313796997},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1980382800102234},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.19420745968818665},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.1868583858013153}],"concepts":[{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5603024363517761},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5409340262413025},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5394317507743835},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5346628427505493},{"id":"https://openalex.org/C2778022302","wikidata":"https://www.wikidata.org/wiki/Q18207329","display_name":"Gene co-expression network","level":5,"score":0.43584054708480835},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3621792793273926},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34054645895957947},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3300624191761017},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.327064573764801},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.30128413438796997},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20704585313796997},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1980382800102234},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.19420745968818665},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.1868583858013153},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086742","descriptor_name":"COVID-19 Testing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086742","descriptor_name":"COVID-19 Testing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086742","descriptor_name":"COVID-19 Testing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btac088","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac088","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35157021","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35157021","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":46,"referenced_works":["https://openalex.org/W937597592","https://openalex.org/W1497063493","https://openalex.org/W1757089901","https://openalex.org/W1966327575","https://openalex.org/W1977871291","https://openalex.org/W2000140185","https://openalex.org/W2061771504","https://openalex.org/W2096173332","https://openalex.org/W2104607769","https://openalex.org/W2128689695","https://openalex.org/W2136230829","https://openalex.org/W2136734008","https://openalex.org/W2140883620","https://openalex.org/W2146408674","https://openalex.org/W2148149542","https://openalex.org/W2149441684","https://openalex.org/W2154947819","https://openalex.org/W2280754716","https://openalex.org/W2345356016","https://openalex.org/W2567437666","https://openalex.org/W2611138580","https://openalex.org/W2797883881","https://openalex.org/W2798235127","https://openalex.org/W2805423673","https://openalex.org/W2899728356","https://openalex.org/W2945412588","https://openalex.org/W2964304355","https://openalex.org/W2968856704","https://openalex.org/W2977253392","https://openalex.org/W3025091645","https://openalex.org/W3028711203","https://openalex.org/W3039349546","https://openalex.org/W3041397352","https://openalex.org/W3093449011","https://openalex.org/W3101369110","https://openalex.org/W3122242878","https://openalex.org/W3126862921","https://openalex.org/W3147894994","https://openalex.org/W3185320280","https://openalex.org/W3200198416","https://openalex.org/W3204374204","https://openalex.org/W4297733535","https://openalex.org/W6624698290","https://openalex.org/W6695679494","https://openalex.org/W6768099333","https://openalex.org/W6798123515"],"related_works":["https://openalex.org/W2391251536","https://openalex.org/W2362198218","https://openalex.org/W1982750869","https://openalex.org/W2019521278","https://openalex.org/W1984922432","https://openalex.org/W2375008505","https://openalex.org/W2085756966","https://openalex.org/W4378602188","https://openalex.org/W1979153484","https://openalex.org/W3041915606"],"abstract_inverted_index":{"The":[0],"codes":[1],"are":[2],"available":[3],"at":[4],"https://github.com/TencentAILabHealthcare/MLA-GNN.":[5]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":17},{"year":2022,"cited_by_count":4}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
