{"id":"https://openalex.org/W4210383848","doi":"https://doi.org/10.1093/bioinformatics/btac064","title":"Fast and compact matching statistics analytics","display_name":"Fast and compact matching statistics analytics","publication_year":2022,"publication_date":"2022-01-31","ids":{"openalex":"https://openalex.org/W4210383848","doi":"https://doi.org/10.1093/bioinformatics/btac064","pmid":"https://pubmed.ncbi.nlm.nih.gov/35134833"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac064","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/7/1838/49010476/btac064.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/7/1838/49010476/btac064.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007639641","display_name":"Fabio Cunial","orcid":"https://orcid.org/0000-0003-0282-5738"},"institutions":[{"id":"https://openalex.org/I4210159854","display_name":"Max Planck Institute of Molecular Cell Biology and Genetics","ror":"https://ror.org/05b8d3w18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210159854"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Fabio Cunial","raw_affiliation_strings":["Max Planck Institute for Molecular Cell Biology and Genetics (MPI-CBG and CSBD) , Dresden 01307, Germany"],"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Molecular Cell Biology and Genetics (MPI-CBG and CSBD) , Dresden 01307, Germany","institution_ids":["https://openalex.org/I4210159854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085879157","display_name":"Olgert Denas","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Olgert Denas","raw_affiliation_strings":["Blue River Technology , Sunnyvale, CA 94086, USA"],"affiliations":[{"raw_affiliation_string":"Blue River Technology , Sunnyvale, CA 94086, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059502958","display_name":"Djamal Belazzougui","orcid":null},"institutions":[{"id":"https://openalex.org/I4210095777","display_name":"Centre de Recherche sur l'Information Scientifique et Technique","ror":"https://ror.org/01k1bte55","country_code":"DZ","type":"government","lineage":["https://openalex.org/I4210095777","https://openalex.org/I4210114810"]}],"countries":["DZ"],"is_corresponding":false,"raw_author_name":"Djamal Belazzougui","raw_affiliation_strings":["CAPA, DTISI, Centre de Recherche sur l\u2019Information Scientifique et Techique , Algiers, Algeria"],"affiliations":[{"raw_affiliation_string":"CAPA, DTISI, Centre de Recherche sur l\u2019Information Scientifique et Techique , Algiers, Algeria","institution_ids":["https://openalex.org/I4210095777"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5007639641"],"corresponding_institution_ids":["https://openalex.org/I4210159854"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.1733,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.45872183,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"38","issue":"7","first_page":"1838","last_page":"1845"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9828000068664551,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7648284435272217},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.6714488863945007},{"id":"https://openalex.org/keywords/string-searching-algorithm","display_name":"String searching algorithm","score":0.5921390056610107},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.5287197232246399},{"id":"https://openalex.org/keywords/lossy-compression","display_name":"Lossy compression","score":0.5220867991447449},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.4914895296096802},{"id":"https://openalex.org/keywords/pattern-matching","display_name":"Pattern matching","score":0.4730231761932373},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4395274519920349},{"id":"https://openalex.org/keywords/associative-array","display_name":"Associative array","score":0.4231642186641693},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.4198639690876007},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3604666590690613},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32528525590896606},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.20226725935935974},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16994839906692505},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13021248579025269}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7648284435272217},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.6714488863945007},{"id":"https://openalex.org/C7757238","wikidata":"https://www.wikidata.org/wiki/Q374040","display_name":"String searching algorithm","level":3,"score":0.5921390056610107},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.5287197232246399},{"id":"https://openalex.org/C165021410","wikidata":"https://www.wikidata.org/wiki/Q55564","display_name":"Lossy compression","level":2,"score":0.5220867991447449},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.4914895296096802},{"id":"https://openalex.org/C68859911","wikidata":"https://www.wikidata.org/wiki/Q1503724","display_name":"Pattern matching","level":2,"score":0.4730231761932373},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4395274519920349},{"id":"https://openalex.org/C168781493","wikidata":"https://www.wikidata.org/wiki/Q80585","display_name":"Associative array","level":2,"score":0.4231642186641693},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.4198639690876007},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3604666590690613},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32528525590896606},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.20226725935935974},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16994839906692505},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13021248579025269},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btac064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac064","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/7/1838/49010476/btac064.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35134833","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35134833","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9665870","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9665870","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac064","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/7/1838/49010476/btac064.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","score":0.46000000834465027,"display_name":"Partnerships for the goals"},{"id":"https://metadata.un.org/sdg/9","score":0.41999998688697815,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4210383848.pdf","grobid_xml":"https://content.openalex.org/works/W4210383848.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1549845494","https://openalex.org/W1614203862","https://openalex.org/W1826264422","https://openalex.org/W1846919320","https://openalex.org/W1971239653","https://openalex.org/W1974033543","https://openalex.org/W1975775747","https://openalex.org/W1991754655","https://openalex.org/W1995552834","https://openalex.org/W2043481183","https://openalex.org/W2057105339","https://openalex.org/W2073921136","https://openalex.org/W2078760069","https://openalex.org/W2103156298","https://openalex.org/W2120771433","https://openalex.org/W2147935317","https://openalex.org/W2155820716","https://openalex.org/W2158727584","https://openalex.org/W2161938817","https://openalex.org/W2167406239","https://openalex.org/W2292149143","https://openalex.org/W2336925273","https://openalex.org/W2339926834","https://openalex.org/W2623355312","https://openalex.org/W2768701570","https://openalex.org/W2802224661","https://openalex.org/W2883535187","https://openalex.org/W2951846000","https://openalex.org/W2991275791","https://openalex.org/W2997334677","https://openalex.org/W3035280753","https://openalex.org/W3042072141","https://openalex.org/W3105951520","https://openalex.org/W3118971041","https://openalex.org/W3161267034","https://openalex.org/W3167683174","https://openalex.org/W3171564659","https://openalex.org/W6634227320","https://openalex.org/W6641201905","https://openalex.org/W6654024880","https://openalex.org/W6770498777"],"related_works":["https://openalex.org/W3145288231","https://openalex.org/W2371263218","https://openalex.org/W4398785990","https://openalex.org/W2092552144","https://openalex.org/W2354196777","https://openalex.org/W2257399947","https://openalex.org/W2965473297","https://openalex.org/W2386746909","https://openalex.org/W2108265183","https://openalex.org/W2021626172"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
