{"id":"https://openalex.org/W4210637231","doi":"https://doi.org/10.1093/bioinformatics/btac044","title":"TMQuery: a database of precomputed template modeling scores for assessment of protein structural similarity","display_name":"TMQuery: a database of precomputed template modeling scores for assessment of protein structural similarity","publication_year":2022,"publication_date":"2022-01-26","ids":{"openalex":"https://openalex.org/W4210637231","doi":"https://doi.org/10.1093/bioinformatics/btac044","pmid":"https://pubmed.ncbi.nlm.nih.gov/35104317"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac044","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac044","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061123311","display_name":"Stephen Price","orcid":"https://orcid.org/0000-0001-9072-7518"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen Price","raw_affiliation_strings":["Computational Biology Department, Carnegie Mellon University , Pittsburgh, PA, USA"],"affiliations":[{"raw_affiliation_string":"Computational Biology Department, Carnegie Mellon University , Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079536499","display_name":"St\u00e9phane Tombeur","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"St\u00e9phane Tombeur","raw_affiliation_strings":["RADIX , Bruxelles, Belgium"],"affiliations":[{"raw_affiliation_string":"RADIX , Bruxelles, Belgium","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078353713","display_name":"D. R. Hudson","orcid":"https://orcid.org/0000-0003-0817-0445"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Alexander Hudson","raw_affiliation_strings":["GSK , Siena, Italy"],"affiliations":[{"raw_affiliation_string":"GSK , Siena, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032829325","display_name":"Nanda Kumar Sathiyamoorthy","orcid":"https://orcid.org/0000-0002-1936-1207"},"institutions":[{"id":"https://openalex.org/I4210117535","display_name":"Cognizant (India)","ror":"https://ror.org/01x51st25","country_code":"IN","type":"company","lineage":["https://openalex.org/I163361683","https://openalex.org/I4210117535"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Nanda Kumar Sathiyamoorthy","raw_affiliation_strings":["Cognizant Technology Solutions , Pune, Maharashtra, India"],"affiliations":[{"raw_affiliation_string":"Cognizant Technology Solutions , Pune, Maharashtra, India","institution_ids":["https://openalex.org/I4210117535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111957170","display_name":"Paul Smyth","orcid":null},"institutions":[{"id":"https://openalex.org/I4210095529","display_name":"GlaxoSmithKline (Belgium)","ror":"https://ror.org/00n3pea85","country_code":"BE","type":"company","lineage":["https://openalex.org/I188950975","https://openalex.org/I4210095529"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Paul Smyth","raw_affiliation_strings":["GSK , Rixensart, Belgium"],"affiliations":[{"raw_affiliation_string":"GSK , Rixensart, Belgium","institution_ids":["https://openalex.org/I4210095529"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100847409","display_name":"Anjana Singh","orcid":null},"institutions":[{"id":"https://openalex.org/I4210117535","display_name":"Cognizant (India)","ror":"https://ror.org/01x51st25","country_code":"IN","type":"company","lineage":["https://openalex.org/I163361683","https://openalex.org/I4210117535"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Anjana Singh","raw_affiliation_strings":["Cognizant Technology Solutions , Pune, Maharashtra, India"],"affiliations":[{"raw_affiliation_string":"Cognizant Technology Solutions , Pune, Maharashtra, India","institution_ids":["https://openalex.org/I4210117535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073993055","display_name":"Mara Peccianti","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mara Peccianti","raw_affiliation_strings":["GSK , Siena, Italy"],"affiliations":[{"raw_affiliation_string":"GSK , Siena, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073807904","display_name":"Elisa Baroncelli","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Elisa Baroncelli","raw_affiliation_strings":["GSK , Siena, Italy"],"affiliations":[{"raw_affiliation_string":"GSK , Siena, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005755141","display_name":"Ahmed Essaghir","orcid":"https://orcid.org/0000-0003-3415-7340"},"institutions":[{"id":"https://openalex.org/I4210095529","display_name":"GlaxoSmithKline (Belgium)","ror":"https://ror.org/00n3pea85","country_code":"BE","type":"company","lineage":["https://openalex.org/I188950975","https://openalex.org/I4210095529"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Ahmed Essaghir","raw_affiliation_strings":["GSK , Rixensart, Belgium"],"affiliations":[{"raw_affiliation_string":"GSK , Rixensart, Belgium","institution_ids":["https://openalex.org/I4210095529"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056405144","display_name":"Ilaria Ferlenghi","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ilaria Ferlenghi","raw_affiliation_strings":["GSK , Siena, Italy"],"affiliations":[{"raw_affiliation_string":"GSK , Siena, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111924024","display_name":"Sanjay Phogat","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sanjay Kumar Phogat","raw_affiliation_strings":["GSK , Siena, Italy"],"affiliations":[{"raw_affiliation_string":"GSK , Siena, Italy","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103278465","display_name":"Gurpreet Singh","orcid":"https://orcid.org/0000-0002-4354-269X"},"institutions":[{"id":"https://openalex.org/I4210114143","display_name":"GlaxoSmithKline (United States)","ror":"https://ror.org/025vn3989","country_code":"US","type":"company","lineage":["https://openalex.org/I188950975","https://openalex.org/I4210114143"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Gurpreet Singh","raw_affiliation_strings":["GSK , Philadelphia, PA, USA"],"affiliations":[{"raw_affiliation_string":"GSK , Philadelphia, PA, USA","institution_ids":["https://openalex.org/I4210114143"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5103278465"],"corresponding_institution_ids":["https://openalex.org/I4210114143"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00829556,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"38","issue":"7","first_page":"2062","last_page":"2063"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7498446702957153},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6719967126846313},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.5434267520904541},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5221990942955017},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.5082914233207703},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.5078466534614563},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4778423011302948},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.468911737203598},{"id":"https://openalex.org/keywords/measure","display_name":"Measure (data warehouse)","score":0.4541269838809967},{"id":"https://openalex.org/keywords/structural-similarity","display_name":"Structural similarity","score":0.4239358901977539},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.40026119351387024},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3207099437713623},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18640941381454468},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.1150224506855011},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.11198949813842773},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08870342373847961}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7498446702957153},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6719967126846313},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.5434267520904541},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5221990942955017},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.5082914233207703},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.5078466534614563},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4778423011302948},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.468911737203598},{"id":"https://openalex.org/C2780009758","wikidata":"https://www.wikidata.org/wiki/Q6804172","display_name":"Measure (data warehouse)","level":2,"score":0.4541269838809967},{"id":"https://openalex.org/C139489369","wikidata":"https://www.wikidata.org/wiki/Q770846","display_name":"Structural similarity","level":2,"score":0.4239358901977539},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.40026119351387024},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3207099437713623},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18640941381454468},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.1150224506855011},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.11198949813842773},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08870342373847961},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btac044","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac044","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35104317","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35104317","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"},{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W2055640060","https://openalex.org/W2102245393","https://openalex.org/W2110483430","https://openalex.org/W2115540209","https://openalex.org/W2125223656","https://openalex.org/W2130479394","https://openalex.org/W2157938277","https://openalex.org/W2161151688","https://openalex.org/W2754113360","https://openalex.org/W2999044305","https://openalex.org/W3030459666"],"related_works":["https://openalex.org/W2349125667","https://openalex.org/W2358805260","https://openalex.org/W27170867","https://openalex.org/W3046651912","https://openalex.org/W2338762894","https://openalex.org/W1975816110","https://openalex.org/W2024299741","https://openalex.org/W2141388583","https://openalex.org/W2805679104","https://openalex.org/W2004500032"],"abstract_inverted_index":{"Publicly":[0],"available":[1],"at":[2],"https://tmquery.gsk.com/.":[3]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
