{"id":"https://openalex.org/W4206948500","doi":"https://doi.org/10.1093/bioinformatics/btac040","title":"RawHummus: an R Shiny app for automated raw data quality control in metabolomics","display_name":"RawHummus: an R Shiny app for automated raw data quality control in metabolomics","publication_year":2022,"publication_date":"2022-01-24","ids":{"openalex":"https://openalex.org/W4206948500","doi":"https://doi.org/10.1093/bioinformatics/btac040","pmid":"https://pubmed.ncbi.nlm.nih.gov/35080628"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac040","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac040","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101532151","display_name":"Yonghui Dong","orcid":"https://orcid.org/0000-0002-0534-3868"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Yonghui Dong","raw_affiliation_strings":["Metabolite Medicine Division, BLAVATNIK CENTER for Drug Discovery, Tel Aviv University , Tel Aviv 69978, Israel"],"affiliations":[{"raw_affiliation_string":"Metabolite Medicine Division, BLAVATNIK CENTER for Drug Discovery, Tel Aviv University , Tel Aviv 69978, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075651180","display_name":"Yana Kazachkova","orcid":"https://orcid.org/0000-0003-3613-4177"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Yana Kazachkova","raw_affiliation_strings":["Department of Plant and Environmental Sciences, Weizmann Institute of Science , Rehovot 7610001, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Plant and Environmental Sciences, Weizmann Institute of Science , Rehovot 7610001, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030476491","display_name":"Meng Gou","orcid":"https://orcid.org/0000-0001-6381-0703"},"institutions":[{"id":"https://openalex.org/I153374732","display_name":"Liaoning Normal University","ror":"https://ror.org/04c3cgg32","country_code":"CN","type":"education","lineage":["https://openalex.org/I153374732"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meng Gou","raw_affiliation_strings":["College of Life Science, Liaoning Normal University , Dalian 116081, China"],"affiliations":[{"raw_affiliation_string":"College of Life Science, Liaoning Normal University , Dalian 116081, China","institution_ids":["https://openalex.org/I153374732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061917572","display_name":"Liat Morgan","orcid":"https://orcid.org/0000-0002-5001-9338"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Liat Morgan","raw_affiliation_strings":["Metabolite Medicine Division, BLAVATNIK CENTER for Drug Discovery, Tel Aviv University , Tel Aviv 69978, Israel"],"affiliations":[{"raw_affiliation_string":"Metabolite Medicine Division, BLAVATNIK CENTER for Drug Discovery, Tel Aviv University , Tel Aviv 69978, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059370416","display_name":"Tal Wachsman","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Tal Wachsman","raw_affiliation_strings":["Metabolite Medicine Division, BLAVATNIK CENTER for Drug Discovery, Tel Aviv University , Tel Aviv 69978, Israel"],"affiliations":[{"raw_affiliation_string":"Metabolite Medicine Division, BLAVATNIK CENTER for Drug Discovery, Tel Aviv University , Tel Aviv 69978, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082716768","display_name":"Ehud Gazit","orcid":"https://orcid.org/0000-0001-5764-1720"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ehud Gazit","raw_affiliation_strings":["Metabolite Medicine Division, BLAVATNIK CENTER for Drug Discovery, Tel Aviv University , Tel Aviv 69978, Israel"],"affiliations":[{"raw_affiliation_string":"Metabolite Medicine Division, BLAVATNIK CENTER for Drug Discovery, Tel Aviv University , Tel Aviv 69978, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070395693","display_name":"Rune Isak Dupont Birkler","orcid":"https://orcid.org/0000-0002-2870-7062"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Rune Isak Dupont Birkler","raw_affiliation_strings":["Metabolite Medicine Division, BLAVATNIK CENTER for Drug Discovery, Tel Aviv University , Tel Aviv 69978, Israel"],"affiliations":[{"raw_affiliation_string":"Metabolite Medicine Division, BLAVATNIK CENTER for Drug Discovery, Tel Aviv University , Tel Aviv 69978, Israel","institution_ids":["https://openalex.org/I16391192"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5070395693"],"corresponding_institution_ids":["https://openalex.org/I16391192"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0294,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.73851903,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"38","issue":"7","first_page":"2072","last_page":"2074"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9685999751091003,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7701708674430847},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.6275554299354553},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.6187608242034912},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.5751327276229858},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5120213627815247},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5024797916412354},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.4792778193950653},{"id":"https://openalex.org/keywords/data-quality","display_name":"Data quality","score":0.44856002926826477},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44304123520851135},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.37355419993400574},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.212418794631958},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13082298636436462},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.09769099950790405},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08935680985450745},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.08376893401145935}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7701708674430847},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.6275554299354553},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.6187608242034912},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.5751327276229858},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5120213627815247},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5024797916412354},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.4792778193950653},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.44856002926826477},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44304123520851135},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37355419993400574},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.212418794631958},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13082298636436462},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.09769099950790405},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08935680985450745},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08376893401145935},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000081362","descriptor_name":"Lipidomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081362","descriptor_name":"Lipidomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081362","descriptor_name":"Lipidomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063731","descriptor_name":"Mobile Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063731","descriptor_name":"Mobile Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063731","descriptor_name":"Mobile Applications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btac040","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac040","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35080628","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35080628","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.44999998807907104,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320312914","display_name":"Blavatnik Family Foundation","ror":null},{"id":"https://openalex.org/F4320322596","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1935492481","https://openalex.org/W2032555174","https://openalex.org/W2081465448","https://openalex.org/W2211150216","https://openalex.org/W2586644082","https://openalex.org/W2784155653","https://openalex.org/W2797004307","https://openalex.org/W2801550178","https://openalex.org/W2985702419","https://openalex.org/W2988486502","https://openalex.org/W3036016048","https://openalex.org/W3040384168","https://openalex.org/W3041911784","https://openalex.org/W3134476671","https://openalex.org/W3135486268","https://openalex.org/W3136446640","https://openalex.org/W3158727675","https://openalex.org/W3188186554"],"related_works":["https://openalex.org/W42525420","https://openalex.org/W4283390424","https://openalex.org/W2137270828","https://openalex.org/W1976072307","https://openalex.org/W4205440119","https://openalex.org/W4292104203","https://openalex.org/W1561393703","https://openalex.org/W2096576371","https://openalex.org/W3033117735","https://openalex.org/W2746208547"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
