{"id":"https://openalex.org/W4206176282","doi":"https://doi.org/10.1093/bioinformatics/btac007","title":"scPretrain: multi-task self-supervised learning for cell-type classification","display_name":"scPretrain: multi-task self-supervised learning for cell-type classification","publication_year":2022,"publication_date":"2022-01-04","ids":{"openalex":"https://openalex.org/W4206176282","doi":"https://doi.org/10.1093/bioinformatics/btac007","pmid":"https://pubmed.ncbi.nlm.nih.gov/34999749"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btac007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac007","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/6/1607/49008834/btac007.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/6/1607/49008834/btac007.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101424484","display_name":"Ruiyi Zhang","orcid":"https://orcid.org/0000-0002-4776-6762"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ruiyi Zhang","raw_affiliation_strings":["School of EECS, Peking University , Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of EECS, Peking University , Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040139742","display_name":"Yunan Luo","orcid":"https://orcid.org/0000-0001-7728-6412"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yunan Luo","raw_affiliation_strings":["Department of Computer Science, University of Illinois at Urbana-Champaign , Urbana, IL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Urbana-Champaign , Urbana, IL, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074269040","display_name":"Jianzhu Ma","orcid":"https://orcid.org/0000-0002-8236-6609"},"institutions":[{"id":"https://openalex.org/I219193219","display_name":"Purdue University West Lafayette","ror":"https://ror.org/02dqehb95","country_code":"US","type":"education","lineage":["https://openalex.org/I219193219"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jianzhu Ma","raw_affiliation_strings":["Department of Biochemistry, Purdue University , West Lafayette, IN, USA","Department of Computer Science, Purdue University , West Lafayette, IN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Purdue University , West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]},{"raw_affiliation_string":"Department of Computer Science, Purdue University , West Lafayette, IN, USA","institution_ids":["https://openalex.org/I219193219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002372483","display_name":"Ming Zhang","orcid":"https://orcid.org/0000-0002-4556-9191"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming Zhang","raw_affiliation_strings":["School of EECS, Peking University , Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of EECS, Peking University , Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100371249","display_name":"Sheng Wang","orcid":"https://orcid.org/0000-0001-9923-4381"},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sheng Wang","raw_affiliation_strings":["Paul G. Allen School of Computer Science & Engineering, University of Washington , Seattle, WA, USA"],"affiliations":[{"raw_affiliation_string":"Paul G. Allen School of Computer Science & Engineering, University of Washington , Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101424484"],"corresponding_institution_ids":["https://openalex.org/I20231570"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.649,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.83370065,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"38","issue":"6","first_page":"1607","last_page":"1614"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11307","display_name":"Domain Adaptation and Few-Shot Learning","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12676","display_name":"Machine Learning and ELM","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7884305119514465},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6459798812866211},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5807944536209106},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.571153998374939},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.5572609305381775},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5561432242393494},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5265686511993408},{"id":"https://openalex.org/keywords/supervised-learning","display_name":"Supervised learning","score":0.515652060508728},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.4970228970050812},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.47455912828445435},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.43139445781707764},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.19806188344955444}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7884305119514465},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6459798812866211},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5807944536209106},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.571153998374939},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.5572609305381775},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5561432242393494},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5265686511993408},{"id":"https://openalex.org/C136389625","wikidata":"https://www.wikidata.org/wiki/Q334384","display_name":"Supervised learning","level":3,"score":0.515652060508728},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.4970228970050812},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.47455912828445435},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.43139445781707764},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.19806188344955444},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000093743","descriptor_name":"Random Forest","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000093743","descriptor_name":"Random Forest","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000093743","descriptor_name":"Random Forest","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btac007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac007","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/6/1607/49008834/btac007.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34999749","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34999749","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btac007","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btac007","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/6/1607/49008834/btac007.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6000000238418579}],"awards":[{"id":"https://openalex.org/G110542724","display_name":null,"funder_award_id":"No. 2018AAA0101902","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1946509491","display_name":null,"funder_award_id":"No. 62106008 and No. 62006004","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3086387397","display_name":null,"funder_award_id":"62106008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G37568934","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5249178904","display_name":null,"funder_award_id":"Grant No. 6","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5254191062","display_name":null,"funder_award_id":"62006004","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7324266398","display_name":null,"funder_award_id":"2018AAA0101902","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G7726157001","display_name":null,"funder_award_id":"Grant No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8863666567","display_name":null,"funder_award_id":"and No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4206176282.pdf","grobid_xml":"https://content.openalex.org/works/W4206176282.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W1986944049","https://openalex.org/W2033403400","https://openalex.org/W2053154970","https://openalex.org/W2135937351","https://openalex.org/W2149573463","https://openalex.org/W2170021941","https://openalex.org/W2472063172","https://openalex.org/W2523620612","https://openalex.org/W2526262591","https://openalex.org/W2550462002","https://openalex.org/W2555502666","https://openalex.org/W2786672974","https://openalex.org/W2786808285","https://openalex.org/W2794480084","https://openalex.org/W2794521141","https://openalex.org/W2807884764","https://openalex.org/W2888562574","https://openalex.org/W2894687190","https://openalex.org/W2896457183","https://openalex.org/W2899190218","https://openalex.org/W2901677030","https://openalex.org/W2904427185","https://openalex.org/W2913668833","https://openalex.org/W2942380588","https://openalex.org/W2949177718","https://openalex.org/W2950180292","https://openalex.org/W2951506174","https://openalex.org/W2959295202","https://openalex.org/W2963917673","https://openalex.org/W2964643116","https://openalex.org/W2966569571","https://openalex.org/W2967177832","https://openalex.org/W2968352143","https://openalex.org/W2971398276","https://openalex.org/W2971653850","https://openalex.org/W2973034691","https://openalex.org/W3002417351","https://openalex.org/W3005552578","https://openalex.org/W3021272327","https://openalex.org/W3021535873","https://openalex.org/W3033243930","https://openalex.org/W3041129226","https://openalex.org/W3043318404","https://openalex.org/W3092295864","https://openalex.org/W3092982430","https://openalex.org/W3093900604","https://openalex.org/W3121168830","https://openalex.org/W3179857518","https://openalex.org/W4234552385","https://openalex.org/W4239026366","https://openalex.org/W6730018477","https://openalex.org/W6738309621","https://openalex.org/W6748816842","https://openalex.org/W6753000030","https://openalex.org/W6753978946","https://openalex.org/W6755207826","https://openalex.org/W6756367734","https://openalex.org/W6767736604","https://openalex.org/W6772452955","https://openalex.org/W6776891279","https://openalex.org/W6780600177"],"related_works":["https://openalex.org/W4386259002","https://openalex.org/W1546989560","https://openalex.org/W3193043704","https://openalex.org/W3171520305","https://openalex.org/W4200112873","https://openalex.org/W2955796858","https://openalex.org/W4224941037","https://openalex.org/W2004826645","https://openalex.org/W3135818052","https://openalex.org/W3161976747"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
