{"id":"https://openalex.org/W4205381020","doi":"https://doi.org/10.1093/bioinformatics/btab876","title":"Robust disease module mining via enumeration of diverse prize-collecting Steiner trees","display_name":"Robust disease module mining via enumeration of diverse prize-collecting Steiner trees","publication_year":2021,"publication_date":"2021-12-31","ids":{"openalex":"https://openalex.org/W4205381020","doi":"https://doi.org/10.1093/bioinformatics/btab876","pmid":"https://pubmed.ncbi.nlm.nih.gov/34984440"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab876","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab876","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/6/1600/49009258/btab876.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/6/1600/49009258/btab876.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032713341","display_name":"Judith Bernett","orcid":"https://orcid.org/0000-0001-5812-8013"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Judith Bernett","raw_affiliation_strings":["Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , 85354 Freising, Germany"],"raw_orcid":"https://orcid.org/0000-0001-5812-8013","affiliations":[{"raw_affiliation_string":"Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , 85354 Freising, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073066645","display_name":"Dominik Krupke","orcid":"https://orcid.org/0000-0003-1573-3496"},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dominik Krupke","raw_affiliation_strings":["Department of Computer Science, TU Braunschweig , 38106 Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, TU Braunschweig , 38106 Braunschweig, Germany","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054291245","display_name":"Sepideh Sadegh","orcid":"https://orcid.org/0000-0003-4851-8848"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sepideh Sadegh","raw_affiliation_strings":["Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , 85354 Freising, Germany","Institute for Computational Systems Biology, University of Hamburg , 22607 Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , 85354 Freising, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Institute for Computational Systems Biology, University of Hamburg , 22607 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073222532","display_name":"Jan Baumbach","orcid":"https://orcid.org/0000-0002-0282-0462"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]}],"countries":["DE","DK"],"is_corresponding":false,"raw_author_name":"Jan Baumbach","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Southern Denmark , 5230 Odense, Denmark","Institute for Computational Systems Biology, University of Hamburg , 22607 Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Southern Denmark , 5230 Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]},{"raw_affiliation_string":"Institute for Computational Systems Biology, University of Hamburg , 22607 Hamburg, Germany","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015542807","display_name":"S\u00e1ndor P. Fekete","orcid":"https://orcid.org/0000-0002-9062-4241"},"institutions":[{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"S\u00e1ndor P Fekete","raw_affiliation_strings":["Braunschweig Integrated Centre of Systems Biology (BRICS) , 38106 Braunschweig, Germany","Department of Computer Science, TU Braunschweig , 38106 Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Braunschweig Integrated Centre of Systems Biology (BRICS) , 38106 Braunschweig, Germany","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, TU Braunschweig , 38106 Braunschweig, Germany","institution_ids":["https://openalex.org/I94509681"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072736528","display_name":"Tim Kacprowski","orcid":"https://orcid.org/0000-0002-5393-2413"},"institutions":[{"id":"https://openalex.org/I34809795","display_name":"Medizinische Hochschule Hannover","ror":"https://ror.org/00f2yqf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I34809795"]},{"id":"https://openalex.org/I94509681","display_name":"Technische Universit\u00e4t Braunschweig","ror":"https://ror.org/010nsgg66","country_code":"DE","type":"education","lineage":["https://openalex.org/I94509681"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tim Kacprowski","raw_affiliation_strings":["Braunschweig Integrated Centre of Systems Biology (BRICS) , 38106 Braunschweig, Germany","Division Data Science in Biomedicine, Peter L. Reichertz Institute for Medical Informatics, Technical University of Braunschweig and Hannover Medical School , 38106 Braunschweig, Germany"],"raw_orcid":"https://orcid.org/0000-0002-5393-2413","affiliations":[{"raw_affiliation_string":"Braunschweig Integrated Centre of Systems Biology (BRICS) , 38106 Braunschweig, Germany","institution_ids":[]},{"raw_affiliation_string":"Division Data Science in Biomedicine, Peter L. Reichertz Institute for Medical Informatics, Technical University of Braunschweig and Hannover Medical School , 38106 Braunschweig, Germany","institution_ids":["https://openalex.org/I94509681","https://openalex.org/I34809795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035928806","display_name":"Markus List","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Markus List","raw_affiliation_strings":["Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , 85354 Freising, Germany"],"raw_orcid":"https://orcid.org/0000-0002-0941-4168","affiliations":[{"raw_affiliation_string":"Chair of Experimental Bioinformatics, TUM School of Life Sciences, Technical University of Munich , 85354 Freising, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087738237","display_name":"David B. Blumenthal","orcid":"https://orcid.org/0000-0001-8651-750X"},"institutions":[{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"David B Blumenthal","raw_affiliation_strings":["Department Artificial Intelligence in Biomedical Engineering (AIBE), Friedrich-Alexander University Erlangen-N\u00fcrnberg (FAU) , 91052 Erlangen, Germany"],"raw_orcid":"https://orcid.org/0000-0001-8651-750X","affiliations":[{"raw_affiliation_string":"Department Artificial Intelligence in Biomedical Engineering (AIBE), Friedrich-Alexander University Erlangen-N\u00fcrnberg (FAU) , 91052 Erlangen, Germany","institution_ids":["https://openalex.org/I181369854"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5087738237"],"corresponding_institution_ids":["https://openalex.org/I181369854"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.6653,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.84705164,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"38","issue":"6","first_page":"1600","last_page":"1606"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.005100000184029341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.0034000000450760126,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.753463089466095},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7464724779129028},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.7432374954223633},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6864265203475952},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.6427141427993774},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6387157440185547},{"id":"https://openalex.org/keywords/enumeration","display_name":"Enumeration","score":0.5774236917495728},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.5752881169319153},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4937797486782074},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3846787214279175},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.339489221572876},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.33758753538131714},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2167421281337738},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.188190758228302},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18730521202087402},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1871996819972992},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14778649806976318},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.13773438334465027},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08588483929634094}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.753463089466095},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7464724779129028},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.7432374954223633},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6864265203475952},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.6427141427993774},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6387157440185547},{"id":"https://openalex.org/C156340839","wikidata":"https://www.wikidata.org/wiki/Q2704791","display_name":"Enumeration","level":2,"score":0.5774236917495728},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.5752881169319153},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4937797486782074},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3846787214279175},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.339489221572876},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33758753538131714},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2167421281337738},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.188190758228302},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18730521202087402},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1871996819972992},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14778649806976318},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.13773438334465027},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08588483929634094},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014197","descriptor_name":"Trees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014197","descriptor_name":"Trees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014197","descriptor_name":"Trees","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab876","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab876","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/6/1600/49009258/btab876.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34984440","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34984440","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:sdu.dk:publications/a7c9feab-a2c2-4a0c-9219-49707839a241","is_oa":false,"landing_page_url":"https://portal.findresearcher.sdu.dk/da/publications/a7c9feab-a2c2-4a0c-9219-49707839a241","pdf_url":null,"source":{"id":"https://openalex.org/S4306400423","display_name":"University of Southern Denmark Research Portal (University of Southern Denmark)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177969490","host_organization_name":"University of Southern Denmark","host_organization_lineage":["https://openalex.org/I177969490"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bernett, J, Krupke, D, Sadegh, S, Baumbach, J, Fekete, S P, Kacprowski, T, List, M & Blumenthal, D B 2022, 'Robust disease module mining via enumeration of diverse prize-collecting Steiner trees', Bioinformatics, vol. 38, no. 6, pp. 1600-1606. https://doi.org/10.1093/bioinformatics/btab876","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab876","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab876","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/6/1600/49009258/btab876.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W1975290397","https://openalex.org/W1976584101","https://openalex.org/W1981112109","https://openalex.org/W1994315639","https://openalex.org/W2001139415","https://openalex.org/W2056782561","https://openalex.org/W2062533676","https://openalex.org/W2080432978","https://openalex.org/W2110256992","https://openalex.org/W2110553827","https://openalex.org/W2112811019","https://openalex.org/W2122863289","https://openalex.org/W2131161884","https://openalex.org/W2132504360","https://openalex.org/W2149018921","https://openalex.org/W2149491227","https://openalex.org/W2154452346","https://openalex.org/W2154952425","https://openalex.org/W2167722995","https://openalex.org/W2344319046","https://openalex.org/W2345657688","https://openalex.org/W2558496942","https://openalex.org/W2583580135","https://openalex.org/W2604731000","https://openalex.org/W2748813301","https://openalex.org/W2774700072","https://openalex.org/W2804501929","https://openalex.org/W2807768168","https://openalex.org/W2890112540","https://openalex.org/W2899942534","https://openalex.org/W2900569176","https://openalex.org/W2901527454","https://openalex.org/W2913996609","https://openalex.org/W2917858269","https://openalex.org/W2950334816","https://openalex.org/W2983166786","https://openalex.org/W3003779035","https://openalex.org/W3003851112","https://openalex.org/W3043379468","https://openalex.org/W3046714933","https://openalex.org/W3102648521","https://openalex.org/W3121786075","https://openalex.org/W3141934318","https://openalex.org/W3194575560"],"related_works":["https://openalex.org/W4386291436","https://openalex.org/W3023169329","https://openalex.org/W4389470870","https://openalex.org/W2782165897","https://openalex.org/W1582950852","https://openalex.org/W4300438041","https://openalex.org/W2054104202","https://openalex.org/W2761254753","https://openalex.org/W1024825291","https://openalex.org/W2139703748"],"abstract_inverted_index":{"MOTIVATION:":[0],"Disease":[1],"module":[2,93],"mining":[3,94],"methods":[4,113],"(DMMMs)":[5],"extract":[6],"subgraphs":[7],"that":[8,109],"constitute":[9],"candidate":[10],"disease":[11,92,146],"mechanisms":[12],"from":[13],"molecular":[14],"interaction":[15,20],"networks":[16],"such":[17],"as":[18],"protein-protein":[19],"(PPI)":[21],"networks.":[22],"Irrespective":[23],"of":[24,52,61,73,97,116,125,134],"the":[25,37,43,59,62,70,76,126,159],"employed":[26],"models,":[27],"DMMMs":[28,44,74],"typically":[29],"include":[30],"non-robust":[31],"steps":[32],"in":[33,75,114,120,162],"their":[34],"workflows,":[35],"i.e.":[36],"computed":[38],"subnetworks":[39,64],"vary":[40],"when":[41],"running":[42],"multiple":[45],"times":[46],"on":[47,58,167],"equivalent":[48],"input.":[49],"This":[50],"lack":[51],"robustness":[53],"has":[54],"a":[55,86,103],"negative":[56],"effect":[57],"trustworthiness":[60],"obtained":[63],"and":[65,136,142,155],"is":[66],"hence":[67],"detrimental":[68],"for":[69],"widespread":[71],"adoption":[72],"biomedical":[77],"sciences.":[78],"RESULTS:":[79],"To":[80],"overcome":[81],"this":[82,163],"problem,":[83],"we":[84,107],"present":[85],"new":[87],"DMMM":[88],"called":[89],"ROBUST":[90,110],"(robust":[91],"via":[95,130],"enumeration":[96],"diverse":[98],"prize-collecting":[99],"Steiner":[100],"trees).":[101],"In":[102],"large-scale":[104],"empirical":[105],"evaluation,":[106],"show":[108],"outperforms":[111],"competing":[112],"terms":[115],"robustness,":[117],"scalability":[118],"and,":[119],"most":[121],"settings,":[122],"functional":[123],"relevance":[124],"produced":[127],"modules,":[128],"measured":[129],"KEGG":[131],"(Kyoto":[132],"Encyclopedia":[133],"Genes":[135],"Genomes)":[137],"gene":[138],"set":[139],"enrichment":[140],"scores":[141],"overlap":[143],"with":[144],"DisGeNET":[145],"genes.":[147],"AVAILABILITY":[148],"AND":[149],"IMPLEMENTATION:":[150],"A":[151],"Python":[152],"3":[153],"implementation":[154],"scripts":[156],"to":[157],"reproduce":[158],"results":[160],"reported":[161],"article":[164],"are":[165,175],"available":[166,176],"GitHub:":[168],"https://github.com/bionetslab/robust,":[169],"https://github.com/bionetslab/robust-eval.":[170],"SUPPLEMENTARY":[171],"INFORMATION:":[172],"Supplementary":[173],"data":[174],"at":[177],"Bioinformatics":[178],"online.":[179]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
