{"id":"https://openalex.org/W4200485205","doi":"https://doi.org/10.1093/bioinformatics/btab862","title":"MAINE: a web tool for multi-omics feature selection and rule-based data exploration","display_name":"MAINE: a web tool for multi-omics feature selection and rule-based data exploration","publication_year":2021,"publication_date":"2021-12-22","ids":{"openalex":"https://openalex.org/W4200485205","doi":"https://doi.org/10.1093/bioinformatics/btab862","pmid":"https://pubmed.ncbi.nlm.nih.gov/34954788"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab862","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab862","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/6/1773/42744308/btab862.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/6/1773/42744308/btab862.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026068211","display_name":"Aleksandra Gruca","orcid":"https://orcid.org/0000-0003-2337-1894"},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Aleksandra Gruca","raw_affiliation_strings":["Department of Computer Networks and Systems, Silesian University of Technology , 44-100 Gliwice, Poland"],"raw_orcid":"https://orcid.org/0000-0003-2337-1894","affiliations":[{"raw_affiliation_string":"Department of Computer Networks and Systems, Silesian University of Technology , 44-100 Gliwice, Poland","institution_ids":["https://openalex.org/I119004910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108763175","display_name":"Joanna Henzel","orcid":null},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Joanna Henzel","raw_affiliation_strings":["Department of Computer Networks and Systems, Silesian University of Technology , 44-100 Gliwice, Poland"],"raw_orcid":"https://orcid.org/0000-0001-7821-1375","affiliations":[{"raw_affiliation_string":"Department of Computer Networks and Systems, Silesian University of Technology , 44-100 Gliwice, Poland","institution_ids":["https://openalex.org/I119004910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045904090","display_name":"I. Kostorz","orcid":"https://orcid.org/0000-0002-5471-0919"},"institutions":[{"id":"https://openalex.org/I3018987834","display_name":"\u0141ukasiewicz Research Network - Institute of Innovative Technologies EMAG","ror":"https://ror.org/03as2hc70","country_code":"PL","type":"other","lineage":["https://openalex.org/I3018987834","https://openalex.org/I4210129336"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Iwona Kostorz","raw_affiliation_strings":["\u0141ukasiewicz Research Network \u2013 Institute of Innovative Technologies EMAG, 40-189 Katowice, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"\u0141ukasiewicz Research Network \u2013 Institute of Innovative Technologies EMAG, 40-189 Katowice, Poland","institution_ids":["https://openalex.org/I3018987834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017554137","display_name":"Tomasz St\u0119clik","orcid":"https://orcid.org/0000-0002-3843-2103"},"institutions":[{"id":"https://openalex.org/I3018987834","display_name":"\u0141ukasiewicz Research Network - Institute of Innovative Technologies EMAG","ror":"https://ror.org/03as2hc70","country_code":"PL","type":"other","lineage":["https://openalex.org/I3018987834","https://openalex.org/I4210129336"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Tomasz St\u0119clik","raw_affiliation_strings":["\u0141ukasiewicz Research Network \u2013 Institute of Innovative Technologies EMAG, 40-189 Katowice, Poland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"\u0141ukasiewicz Research Network \u2013 Institute of Innovative Technologies EMAG, 40-189 Katowice, Poland","institution_ids":["https://openalex.org/I3018987834"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046584737","display_name":"\u0141ukasz Wr\u00f3bel","orcid":"https://orcid.org/0000-0002-5715-6239"},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"\u0141ukasz Wr\u00f3bel","raw_affiliation_strings":["Department of Computer Networks and Systems, Silesian University of Technology , 44-100 Gliwice, Poland"],"raw_orcid":"https://orcid.org/0000-0002-5715-6239","affiliations":[{"raw_affiliation_string":"Department of Computer Networks and Systems, Silesian University of Technology , 44-100 Gliwice, Poland","institution_ids":["https://openalex.org/I119004910"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046867957","display_name":"Marek Sikora","orcid":"https://orcid.org/0000-0002-2393-9761"},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]},{"id":"https://openalex.org/I3018987834","display_name":"\u0141ukasiewicz Research Network - Institute of Innovative Technologies EMAG","ror":"https://ror.org/03as2hc70","country_code":"PL","type":"other","lineage":["https://openalex.org/I3018987834","https://openalex.org/I4210129336"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"Marek Sikora","raw_affiliation_strings":["Department of Computer Networks and Systems, Silesian University of Technology , 44-100 Gliwice, Poland","\u0141ukasiewicz Research Network \u2013 Institute of Innovative Technologies EMAG, 40-189 Katowice, Poland"],"raw_orcid":"https://orcid.org/0000-0002-2393-9761","affiliations":[{"raw_affiliation_string":"Department of Computer Networks and Systems, Silesian University of Technology , 44-100 Gliwice, Poland","institution_ids":["https://openalex.org/I119004910"]},{"raw_affiliation_string":"\u0141ukasiewicz Research Network \u2013 Institute of Innovative Technologies EMAG, 40-189 Katowice, Poland","institution_ids":["https://openalex.org/I3018987834"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5026068211","https://openalex.org/A5046867957"],"corresponding_institution_ids":["https://openalex.org/I119004910","https://openalex.org/I3018987834"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.4071,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.60459279,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"38","issue":"6","first_page":"1773","last_page":"1775"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6897000074386597,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6897000074386597,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.06159999966621399,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.050700001418590546,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.7337226867675781},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.7271735668182373},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6500271558761597},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5264250040054321},{"id":"https://openalex.org/keywords/outcome","display_name":"Outcome (game theory)","score":0.5145301222801208},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.508906364440918},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.44405972957611084},{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.4282236099243164},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.39901164174079895},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35854625701904297},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3389050364494324},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.26110124588012695},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10696828365325928},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08654025197029114}],"concepts":[{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.7337226867675781},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.7271735668182373},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6500271558761597},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5264250040054321},{"id":"https://openalex.org/C148220186","wikidata":"https://www.wikidata.org/wiki/Q7111912","display_name":"Outcome (game theory)","level":2,"score":0.5145301222801208},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.508906364440918},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.44405972957611084},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.4282236099243164},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.39901164174079895},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35854625701904297},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3389050364494324},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.26110124588012695},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10696828365325928},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08654025197029114},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C144237770","wikidata":"https://www.wikidata.org/wiki/Q747534","display_name":"Mathematical economics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008281","descriptor_name":"Maine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008281","descriptor_name":"Maine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008281","descriptor_name":"Maine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab862","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab862","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/6/1773/42744308/btab862.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34954788","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34954788","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8896606","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8896606","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab862","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab862","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/6/1773/42744308/btab862.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions","score":0.7300000190734863}],"awards":[{"id":"https://openalex.org/G5817729712","display_name":null,"funder_award_id":"02/120/BKM21/0012","funder_id":"https://openalex.org/F4320324727","funder_display_name":"Silesian University of Technology"}],"funders":[{"id":"https://openalex.org/F4320324727","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1255676896","https://openalex.org/W2052825782","https://openalex.org/W2123998733","https://openalex.org/W2151101158","https://openalex.org/W2604505723","https://openalex.org/W2609900490","https://openalex.org/W2805504678","https://openalex.org/W2950985821","https://openalex.org/W2952143471","https://openalex.org/W2963421754","https://openalex.org/W2999739068","https://openalex.org/W3101981467","https://openalex.org/W3121022319","https://openalex.org/W3124373176","https://openalex.org/W3154319016","https://openalex.org/W3165414213","https://openalex.org/W6762296466"],"related_works":["https://openalex.org/W2978999882","https://openalex.org/W3176621072","https://openalex.org/W2153369162","https://openalex.org/W2119369480","https://openalex.org/W3141031773","https://openalex.org/W177137871","https://openalex.org/W1595686156","https://openalex.org/W20047544","https://openalex.org/W4386564352","https://openalex.org/W2952668426"],"abstract_inverted_index":{"SUMMARY:":[0],"Patient":[1],"multi-omics":[2,87],"datasets":[3],"are":[4,101,130],"often":[5],"characterized":[6],"by":[7],"a":[8,14,44],"high":[9],"dimensionality;":[10],"however,":[11],"usually":[12],"only":[13],"small":[15],"fraction":[16],"of":[17,75,106],"the":[18,32,49,56,78,85,104],"features":[19,88],"is":[20,23,28,59,77,116],"informative,":[21],"that":[22],"change":[24],"in":[25,41,55,103],"their":[26],"value":[27],"directly":[29],"related":[30],"to":[31,43,51,80],"disease":[33],"outcome":[34,91],"or":[35],"patient":[36,96],"survival.":[37],"In":[38],"medical":[39],"sciences,":[40],"addition":[42],"robust":[45],"feature":[46],"selection":[47],"procedure,":[48],"ability":[50,79],"discover":[52,81],"human-readable":[53],"patterns":[54,100],"analyzed":[57],"data":[58,129],"also":[60],"desirable.":[61],"To":[62],"address":[63],"this":[64],"need,":[65],"we":[66],"created":[67],"MAINE-Multi-omics":[68],"Analysis":[69],"and":[70,89,110],"Exploration.":[71],"The":[72],"unique":[73],"functionality":[74],"MAINE":[76,115],"multidimensional":[82],"dependencies":[83],"between":[84],"selected":[86],"event":[90],"prediction":[92],"as":[93,95,121],"well":[94],"survival":[97],"probability.":[98],"Learned":[99],"visualized":[102],"form":[105],"interpretable":[107],"decision/survival":[108],"trees":[109],"rules.":[111],"AVAILABILITY":[112],"AND":[113],"IMPLEMENTATION:":[114],"freely":[117],"available":[118,131],"at":[119,132],"maine.ibemag.pl":[120],"an":[122],"online":[123],"web":[124],"application.":[125],"SUPPLEMENTARY":[126],"INFORMATION:":[127],"Supplementary":[128],"Bioinformatics":[133],"online.":[134]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
