{"id":"https://openalex.org/W4200537747","doi":"https://doi.org/10.1093/bioinformatics/btab860","title":"Comparing transmembrane protein structures with ATOLL","display_name":"Comparing transmembrane protein structures with ATOLL","publication_year":2021,"publication_date":"2021-12-21","ids":{"openalex":"https://openalex.org/W4200537747","doi":"https://doi.org/10.1093/bioinformatics/btab860","pmid":"https://pubmed.ncbi.nlm.nih.gov/34954796"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab860","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab860","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074291763","display_name":"C\u00e9lien Jacquemard","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"C\u00e9lien Jacquemard","raw_affiliation_strings":["UMR7200 CNRS-Universit\u00e9 de Strasbourg, Institut du M\u00e9dicament de Strasbourg , Facult\u00e9 de Pharmacie, 67400 Illkirch-Graffenstaden, France"],"affiliations":[{"raw_affiliation_string":"UMR7200 CNRS-Universit\u00e9 de Strasbourg, Institut du M\u00e9dicament de Strasbourg , Facult\u00e9 de Pharmacie, 67400 Illkirch-Graffenstaden, France","institution_ids":["https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077272199","display_name":"Guillaume Bret","orcid":"https://orcid.org/0000-0001-5434-0906"},"institutions":[{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Bret","raw_affiliation_strings":["UMR7200 CNRS-Universit\u00e9 de Strasbourg, Institut du M\u00e9dicament de Strasbourg , Facult\u00e9 de Pharmacie, 67400 Illkirch-Graffenstaden, France"],"affiliations":[{"raw_affiliation_string":"UMR7200 CNRS-Universit\u00e9 de Strasbourg, Institut du M\u00e9dicament de Strasbourg , Facult\u00e9 de Pharmacie, 67400 Illkirch-Graffenstaden, France","institution_ids":["https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008000898","display_name":"Thomas Gr\u00fctter","orcid":"https://orcid.org/0000-0002-4351-9203"},"institutions":[{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Thomas Grutter","raw_affiliation_strings":["UMR7199 CNRS-Universit\u00e9 de Strasbourg , Facult\u00e9 de Pharmacie, 67400 Illkirch-Graffenstaden, France"],"affiliations":[{"raw_affiliation_string":"UMR7199 CNRS-Universit\u00e9 de Strasbourg , Facult\u00e9 de Pharmacie, 67400 Illkirch-Graffenstaden, France","institution_ids":["https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005741666","display_name":"Esther Kellenberger","orcid":"https://orcid.org/0000-0002-9320-4840"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Esther Kellenberger","raw_affiliation_strings":["UMR7200 CNRS-Universit\u00e9 de Strasbourg, Institut du M\u00e9dicament de Strasbourg , Facult\u00e9 de Pharmacie, 67400 Illkirch-Graffenstaden, France"],"affiliations":[{"raw_affiliation_string":"UMR7200 CNRS-Universit\u00e9 de Strasbourg, Institut du M\u00e9dicament de Strasbourg , Facult\u00e9 de Pharmacie, 67400 Illkirch-Graffenstaden, France","institution_ids":["https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5005741666"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I68947357"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.0804,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.45430953,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"38","issue":"6","first_page":"1743","last_page":"1744"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10407","display_name":"Lipid Membrane Structure and Behavior","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/atoll","display_name":"Atoll","score":0.791843056678772},{"id":"https://openalex.org/keywords/transmembrane-protein","display_name":"Transmembrane protein","score":0.6828895807266235},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5101101994514465},{"id":"https://openalex.org/keywords/helix-bundle","display_name":"Helix bundle","score":0.49957776069641113},{"id":"https://openalex.org/keywords/transmembrane-domain","display_name":"Transmembrane domain","score":0.4638158679008484},{"id":"https://openalex.org/keywords/bundle","display_name":"Bundle","score":0.45683878660202026},{"id":"https://openalex.org/keywords/lipid-bilayer","display_name":"Lipid bilayer","score":0.45178067684173584},{"id":"https://openalex.org/keywords/membrane-protein","display_name":"Membrane protein","score":0.4474060535430908},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.35104966163635254},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3112078905105591},{"id":"https://openalex.org/keywords/membrane","display_name":"Membrane","score":0.2360897660255432},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.1925976276397705},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1495322287082672},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.08427900075912476}],"concepts":[{"id":"https://openalex.org/C117480383","wikidata":"https://www.wikidata.org/wiki/Q42523","display_name":"Atoll","level":3,"score":0.791843056678772},{"id":"https://openalex.org/C24530287","wikidata":"https://www.wikidata.org/wiki/Q424204","display_name":"Transmembrane protein","level":3,"score":0.6828895807266235},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5101101994514465},{"id":"https://openalex.org/C203087120","wikidata":"https://www.wikidata.org/wiki/Q372229","display_name":"Helix bundle","level":3,"score":0.49957776069641113},{"id":"https://openalex.org/C118892022","wikidata":"https://www.wikidata.org/wiki/Q7834587","display_name":"Transmembrane domain","level":3,"score":0.4638158679008484},{"id":"https://openalex.org/C2778134712","wikidata":"https://www.wikidata.org/wiki/Q1047307","display_name":"Bundle","level":2,"score":0.45683878660202026},{"id":"https://openalex.org/C39944091","wikidata":"https://www.wikidata.org/wiki/Q423279","display_name":"Lipid bilayer","level":3,"score":0.45178067684173584},{"id":"https://openalex.org/C144647389","wikidata":"https://www.wikidata.org/wiki/Q423042","display_name":"Membrane protein","level":3,"score":0.4474060535430908},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.35104966163635254},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3112078905105591},{"id":"https://openalex.org/C41625074","wikidata":"https://www.wikidata.org/wiki/Q176088","display_name":"Membrane","level":2,"score":0.2360897660255432},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.1925976276397705},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1495322287082672},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.08427900075912476},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C77044568","wikidata":"https://www.wikidata.org/wiki/Q184358","display_name":"Reef","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008565","descriptor_name":"Membrane Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btab860","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab860","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34954796","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34954796","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-03553380v1","is_oa":false,"landing_page_url":"https://hal.science/hal-03553380","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2021, &#x27E8;10.1093/bioinformatics/btab860&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8700000047683716,"id":"https://metadata.un.org/sdg/14","display_name":"Life below water"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1997340548","https://openalex.org/W2057013716","https://openalex.org/W2105537627","https://openalex.org/W2140831051","https://openalex.org/W2170711116","https://openalex.org/W2973523639"],"related_works":["https://openalex.org/W2155273871","https://openalex.org/W2028076297","https://openalex.org/W2108009726","https://openalex.org/W1540599686","https://openalex.org/W1974240269","https://openalex.org/W2375292076","https://openalex.org/W1963776748","https://openalex.org/W2155932650","https://openalex.org/W2737740661","https://openalex.org/W2040208869"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
