{"id":"https://openalex.org/W4205945194","doi":"https://doi.org/10.1093/bioinformatics/btab858","title":"CoDNaS-RNA: a database of conformational diversity in the native state of RNA","display_name":"CoDNaS-RNA: a database of conformational diversity in the native state of RNA","publication_year":2021,"publication_date":"2021-12-23","ids":{"openalex":"https://openalex.org/W4205945194","doi":"https://doi.org/10.1093/bioinformatics/btab858","pmid":"https://pubmed.ncbi.nlm.nih.gov/34954795"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab858","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab858","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088153653","display_name":"Mart\u00edn Gonz\u00e1lez Buitr\u00f3n","orcid":"https://orcid.org/0000-0003-1123-9853"},"institutions":[{"id":"https://openalex.org/I138504249","display_name":"National University of Quilmes","ror":"https://ror.org/01r53hz59","country_code":"AR","type":"education","lineage":["https://openalex.org/I138504249"]},{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Mart\u00edn Gonz\u00e1lez Buitr\u00f3n","raw_affiliation_strings":["Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas , Buenos Aires, Argentina","Departamento de Ciencia y Tecnolog\u00eda, Universidad Nacional de Quilmes , Buenos Aires, Argentina"],"affiliations":[{"raw_affiliation_string":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas , Buenos Aires, Argentina","institution_ids":["https://openalex.org/I151201029"]},{"raw_affiliation_string":"Departamento de Ciencia y Tecnolog\u00eda, Universidad Nacional de Quilmes , Buenos Aires, Argentina","institution_ids":["https://openalex.org/I138504249"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059163121","display_name":"Ronaldo Romario Tunque Cahui","orcid":"https://orcid.org/0000-0002-1010-1222"},"institutions":[{"id":"https://openalex.org/I65285256","display_name":"Pontificia Universidad Cat\u00f3lica del Per\u00fa","ror":"https://ror.org/00013q465","country_code":"PE","type":"education","lineage":["https://openalex.org/I65285256"]}],"countries":["PE"],"is_corresponding":false,"raw_author_name":"Ronaldo Romario Tunque Cahui","raw_affiliation_strings":["Departamento de Ingenier\u00eda, Pontificia Universidad Cat\u00f3lica del Per\u00fa , Lima, Peru"],"affiliations":[{"raw_affiliation_string":"Departamento de Ingenier\u00eda, Pontificia Universidad Cat\u00f3lica del Per\u00fa , Lima, Peru","institution_ids":["https://openalex.org/I65285256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071430843","display_name":"Emilio Garc\u00eda R\u00edos","orcid":"https://orcid.org/0000-0002-0699-4769"},"institutions":[{"id":"https://openalex.org/I65285256","display_name":"Pontificia Universidad Cat\u00f3lica del Per\u00fa","ror":"https://ror.org/00013q465","country_code":"PE","type":"education","lineage":["https://openalex.org/I65285256"]}],"countries":["PE"],"is_corresponding":false,"raw_author_name":"Emilio Garc\u00eda R\u00edos","raw_affiliation_strings":["Departamento de Ingenier\u00eda, Pontificia Universidad Cat\u00f3lica del Per\u00fa , Lima, Peru"],"affiliations":[{"raw_affiliation_string":"Departamento de Ingenier\u00eda, Pontificia Universidad Cat\u00f3lica del Per\u00fa , Lima, Peru","institution_ids":["https://openalex.org/I65285256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002583364","display_name":"Layla Hirsh","orcid":"https://orcid.org/0000-0002-8215-6716"},"institutions":[{"id":"https://openalex.org/I65285256","display_name":"Pontificia Universidad Cat\u00f3lica del Per\u00fa","ror":"https://ror.org/00013q465","country_code":"PE","type":"education","lineage":["https://openalex.org/I65285256"]}],"countries":["PE"],"is_corresponding":false,"raw_author_name":"Layla Hirsh","raw_affiliation_strings":["Departamento de Ingenier\u00eda, Pontificia Universidad Cat\u00f3lica del Per\u00fa , Lima, Peru"],"affiliations":[{"raw_affiliation_string":"Departamento de Ingenier\u00eda, Pontificia Universidad Cat\u00f3lica del Per\u00fa , Lima, Peru","institution_ids":["https://openalex.org/I65285256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037751052","display_name":"Gustavo Parisi","orcid":"https://orcid.org/0000-0001-7444-1624"},"institutions":[{"id":"https://openalex.org/I138504249","display_name":"National University of Quilmes","ror":"https://ror.org/01r53hz59","country_code":"AR","type":"education","lineage":["https://openalex.org/I138504249"]},{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Gustavo Parisi","raw_affiliation_strings":["Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas , Buenos Aires, Argentina","Departamento de Ciencia y Tecnolog\u00eda, Universidad Nacional de Quilmes , Buenos Aires, Argentina"],"affiliations":[{"raw_affiliation_string":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas , Buenos Aires, Argentina","institution_ids":["https://openalex.org/I151201029"]},{"raw_affiliation_string":"Departamento de Ciencia y Tecnolog\u00eda, Universidad Nacional de Quilmes , Buenos Aires, Argentina","institution_ids":["https://openalex.org/I138504249"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010536481","display_name":"Mar\u0131\u0301a Silvina Fornasari","orcid":"https://orcid.org/0000-0003-2081-0222"},"institutions":[{"id":"https://openalex.org/I138504249","display_name":"National University of Quilmes","ror":"https://ror.org/01r53hz59","country_code":"AR","type":"education","lineage":["https://openalex.org/I138504249"]},{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Mar\u00eda Silvina Fornasari","raw_affiliation_strings":["Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas , Buenos Aires, Argentina","Departamento de Ciencia y Tecnolog\u00eda, Universidad Nacional de Quilmes , Buenos Aires, Argentina"],"affiliations":[{"raw_affiliation_string":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas , Buenos Aires, Argentina","institution_ids":["https://openalex.org/I151201029"]},{"raw_affiliation_string":"Departamento de Ciencia y Tecnolog\u00eda, Universidad Nacional de Quilmes , Buenos Aires, Argentina","institution_ids":["https://openalex.org/I138504249"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083072847","display_name":"Nicol\u00e1s Pal\u00f3poli","orcid":"https://orcid.org/0000-0001-7925-6436"},"institutions":[{"id":"https://openalex.org/I138504249","display_name":"National University of Quilmes","ror":"https://ror.org/01r53hz59","country_code":"AR","type":"education","lineage":["https://openalex.org/I138504249"]},{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":true,"raw_author_name":"Nicolas Palopoli","raw_affiliation_strings":["Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas , Buenos Aires, Argentina","Departamento de Ciencia y Tecnolog\u00eda, Universidad Nacional de Quilmes , Buenos Aires, Argentina"],"affiliations":[{"raw_affiliation_string":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas , Buenos Aires, Argentina","institution_ids":["https://openalex.org/I151201029"]},{"raw_affiliation_string":"Departamento de Ciencia y Tecnolog\u00eda, Universidad Nacional de Quilmes , Buenos Aires, Argentina","institution_ids":["https://openalex.org/I138504249"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5083072847"],"corresponding_institution_ids":["https://openalex.org/I138504249","https://openalex.org/I151201029"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.244,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.54510088,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"38","issue":"6","first_page":"1745","last_page":"1748"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.8066227436065674},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5950925350189209},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.5489053726196289},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.547038733959198},{"id":"https://openalex.org/keywords/conformational-isomerism","display_name":"Conformational isomerism","score":0.5463890433311462},{"id":"https://openalex.org/keywords/conformational-ensembles","display_name":"Conformational ensembles","score":0.4833543002605438},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.46046018600463867},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4232238233089447},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.37717747688293457},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3313950300216675},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.2681913375854492},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.254302442073822},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.2296178638935089},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.19007280468940735},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18150776624679565},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10633796453475952},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07451522350311279}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.8066227436065674},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5950925350189209},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.5489053726196289},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.547038733959198},{"id":"https://openalex.org/C18705241","wikidata":"https://www.wikidata.org/wiki/Q1128023","display_name":"Conformational isomerism","level":3,"score":0.5463890433311462},{"id":"https://openalex.org/C2777936996","wikidata":"https://www.wikidata.org/wiki/Q17148461","display_name":"Conformational ensembles","level":3,"score":0.4833543002605438},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.46046018600463867},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4232238233089447},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37717747688293457},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3313950300216675},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.2681913375854492},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.254302442073822},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.2296178638935089},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.19007280468940735},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18150776624679565},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10633796453475952},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07451522350311279},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008968","descriptor_name":"Molecular Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab858","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab858","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34954795","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34954795","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5400000214576721,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[{"id":"https://openalex.org/G1964739118","display_name":null,"funder_award_id":"PUNQ 1309/19","funder_id":"https://openalex.org/F4320325873","funder_display_name":"Universidad Nacional de Quilmes"},{"id":"https://openalex.org/G2037330086","display_name":null,"funder_award_id":"PIP-2015-2017 11220150100853CO","funder_id":"https://openalex.org/F4320321594","funder_display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas"},{"id":"https://openalex.org/G4555834076","display_name":null,"funder_award_id":"PICT-2018 3457","funder_id":"https://openalex.org/F4320331467","funder_display_name":"Agencia Nacional de Promoci\u00f3n de la Investigaci\u00f3n, el Desarrollo Tecnol\u00f3gico y la Innovaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320321594","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59"},{"id":"https://openalex.org/F4320325873","display_name":"Universidad Nacional de Quilmes","ror":"https://ror.org/01r53hz59"},{"id":"https://openalex.org/F4320331467","display_name":"Agencia Nacional de Promoci\u00f3n de la Investigaci\u00f3n, el Desarrollo Tecnol\u00f3gico y la Innovaci\u00f3n","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1672171675","https://openalex.org/W2068146975","https://openalex.org/W2102245393","https://openalex.org/W2130479394","https://openalex.org/W2133014975","https://openalex.org/W2147128567","https://openalex.org/W2156125289","https://openalex.org/W2170576426","https://openalex.org/W2178096376","https://openalex.org/W2315174892","https://openalex.org/W2412067313","https://openalex.org/W2766848373","https://openalex.org/W2799989945","https://openalex.org/W2899798803","https://openalex.org/W2949078846","https://openalex.org/W6637288986"],"related_works":["https://openalex.org/W2023036309","https://openalex.org/W1972863456","https://openalex.org/W2089371831","https://openalex.org/W2052399476","https://openalex.org/W2810163160","https://openalex.org/W2037964119","https://openalex.org/W1494829770","https://openalex.org/W4220905048","https://openalex.org/W4385077663","https://openalex.org/W2610329791"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
