{"id":"https://openalex.org/W3215350456","doi":"https://doi.org/10.1093/bioinformatics/btab800","title":"Computational modeling of mRNA degradation dynamics using deep neural networks","display_name":"Computational modeling of mRNA degradation dynamics using deep neural networks","publication_year":2021,"publication_date":"2021-11-22","ids":{"openalex":"https://openalex.org/W3215350456","doi":"https://doi.org/10.1093/bioinformatics/btab800","mag":"3215350456","pmid":"https://pubmed.ncbi.nlm.nih.gov/34849591"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab800","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab800","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028033142","display_name":"Ofir Yaish","orcid":"https://orcid.org/0000-0002-7113-0684"},"institutions":[{"id":"https://openalex.org/I124227911","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982","country_code":"IL","type":"education","lineage":["https://openalex.org/I124227911"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ofir Yaish","raw_affiliation_strings":["School of Electrical and Computer Engineering, Ben-Gurion University of the Negev , Beer-Sheva 8410501, Israel"],"affiliations":[{"raw_affiliation_string":"School of Electrical and Computer Engineering, Ben-Gurion University of the Negev , Beer-Sheva 8410501, Israel","institution_ids":["https://openalex.org/I124227911"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037786810","display_name":"Yaron Orenstein","orcid":"https://orcid.org/0000-0002-3583-3112"},"institutions":[{"id":"https://openalex.org/I124227911","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982","country_code":"IL","type":"education","lineage":["https://openalex.org/I124227911"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Yaron Orenstein","raw_affiliation_strings":["School of Electrical and Computer Engineering, Ben-Gurion University of the Negev , Beer-Sheva 8410501, Israel"],"affiliations":[{"raw_affiliation_string":"School of Electrical and Computer Engineering, Ben-Gurion University of the Negev , Beer-Sheva 8410501, Israel","institution_ids":["https://openalex.org/I124227911"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5037786810"],"corresponding_institution_ids":["https://openalex.org/I124227911"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4057,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.60189968,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"38","issue":"4","first_page":"1087","last_page":"1101"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.6728934645652771},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.586696982383728},{"id":"https://openalex.org/keywords/untranslated-region","display_name":"Untranslated region","score":0.5463273525238037},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5235537886619568},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.498995304107666},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.4818666875362396},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4274609088897705},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40454649925231934},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3894272446632385},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.265988826751709},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15481498837471008}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.6728934645652771},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.586696982383728},{"id":"https://openalex.org/C89604277","wikidata":"https://www.wikidata.org/wiki/Q424345","display_name":"Untranslated region","level":4,"score":0.5463273525238037},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5235537886619568},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.498995304107666},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.4818666875362396},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4274609088897705},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40454649925231934},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3894272446632385},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.265988826751709},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15481498837471008}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020413","descriptor_name":"3' Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020413","descriptor_name":"3' Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020413","descriptor_name":"3' Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020871","descriptor_name":"RNA Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020871","descriptor_name":"RNA Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020871","descriptor_name":"RNA Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab800","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab800","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34849591","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34849591","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320323051","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1019830208","https://openalex.org/W1501531009","https://openalex.org/W1996031526","https://openalex.org/W2003230246","https://openalex.org/W2013782508","https://openalex.org/W2042335793","https://openalex.org/W2047956182","https://openalex.org/W2064675550","https://openalex.org/W2086561953","https://openalex.org/W2112796928","https://openalex.org/W2132397441","https://openalex.org/W2132863465","https://openalex.org/W2135046866","https://openalex.org/W2138077148","https://openalex.org/W2144015117","https://openalex.org/W2198606573","https://openalex.org/W2298977477","https://openalex.org/W2345512687","https://openalex.org/W2434565902","https://openalex.org/W2518100556","https://openalex.org/W2563353435","https://openalex.org/W2592216350","https://openalex.org/W2751247278","https://openalex.org/W2762868004","https://openalex.org/W2772439186","https://openalex.org/W2794004073","https://openalex.org/W2884297880","https://openalex.org/W2890132714","https://openalex.org/W2911964244","https://openalex.org/W2950463913","https://openalex.org/W2950756610","https://openalex.org/W2951212842","https://openalex.org/W2951621517","https://openalex.org/W2962862931","https://openalex.org/W2995997429","https://openalex.org/W2999615587","https://openalex.org/W3003684254","https://openalex.org/W3035587935","https://openalex.org/W3036652698","https://openalex.org/W3126464728","https://openalex.org/W3163257742","https://openalex.org/W6680156768","https://openalex.org/W6737947904"],"related_works":["https://openalex.org/W3174925618","https://openalex.org/W2023978881","https://openalex.org/W2016832127","https://openalex.org/W2066337857","https://openalex.org/W2037244830","https://openalex.org/W1979226940","https://openalex.org/W2063674507","https://openalex.org/W2073834597","https://openalex.org/W2101281838","https://openalex.org/W2413745830"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-31T07:56:22.981413","created_date":"2025-10-10T00:00:00"}
