{"id":"https://openalex.org/W4200591176","doi":"https://doi.org/10.1093/bioinformatics/btab799","title":"SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2\u2013human mimicry and interactions","display_name":"SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2\u2013human mimicry and interactions","publication_year":2021,"publication_date":"2021-11-25","ids":{"openalex":"https://openalex.org/W4200591176","doi":"https://doi.org/10.1093/bioinformatics/btab799","pmid":"https://pubmed.ncbi.nlm.nih.gov/34864889"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab799","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab799","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/5/1455/42419261/btab799.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/38/5/1455/42419261/btab799.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048740262","display_name":"Damla Ovek","orcid":"https://orcid.org/0000-0001-5300-8098"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Damla Ovek","raw_affiliation_strings":["Department of Computer Engineering, Koc University , Bank AI Center, Istanbul 34450, Turkey"],"raw_orcid":"https://orcid.org/0000-0001-5300-8098","affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Koc University , Bank AI Center, Istanbul 34450, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031824734","display_name":"Ameer Taweel","orcid":null},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ameer Taweel","raw_affiliation_strings":["Department of Computer Engineering, Koc University , Bank AI Center, Istanbul 34450, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Koc University , Bank AI Center, Istanbul 34450, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066446706","display_name":"Zeynep Abali","orcid":"https://orcid.org/0000-0003-4059-9233"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Zeynep Abali","raw_affiliation_strings":["Graduate School of Science and Engineering, Koc University , Bank AI Center, Istanbul 24450, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Science and Engineering, Koc University , Bank AI Center, Istanbul 24450, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035679590","display_name":"Ece Tezsezen","orcid":"https://orcid.org/0000-0001-9705-4555"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ece Tezsezen","raw_affiliation_strings":["Graduate School of Science and Engineering, Koc University , Bank AI Center, Istanbul 24450, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate School of Science and Engineering, Koc University , Bank AI Center, Istanbul 24450, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027121376","display_name":"Yunus Emre K\u00f6ro\u011flu","orcid":"https://orcid.org/0000-0002-1471-7294"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Yunus Emre Koroglu","raw_affiliation_strings":["Graduate School of Science and Engineering, Koc University , Bank AI Center, Istanbul 24450, Turkey"],"raw_orcid":"https://orcid.org/0000-0002-1471-7294","affiliations":[{"raw_affiliation_string":"Graduate School of Science and Engineering, Koc University , Bank AI Center, Istanbul 24450, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020262392","display_name":"Chung\u2010Jung Tsai","orcid":"https://orcid.org/0000-0003-1524-9928"},"institutions":[{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chung-Jung Tsai","raw_affiliation_strings":["Computational Structural Biology Section, Frederick National Laboratory for Cancer Research, National Cancer Institute at Frederick , Frederick, MD 21702, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Structural Biology Section, Frederick National Laboratory for Cancer Research, National Cancer Institute at Frederick , Frederick, MD 21702, USA","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I4210140884"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025357844","display_name":"Ruth Nussinov","orcid":"https://orcid.org/0000-0002-8115-6415"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]},{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Ruth Nussinov","raw_affiliation_strings":["Computational Structural Biology Section, Frederick National Laboratory for Cancer Research, National Cancer Institute at Frederick , Frederick, MD 21702, USA","Department of Human Molecular Genetics and Biochemistry, Sackler School of Medicine, Tel Aviv University , Tel Aviv 69978, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Structural Biology Section, Frederick National Laboratory for Cancer Research, National Cancer Institute at Frederick , Frederick, MD 21702, USA","institution_ids":["https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"raw_affiliation_string":"Department of Human Molecular Genetics and Biochemistry, Sackler School of Medicine, Tel Aviv University , Tel Aviv 69978, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057115991","display_name":"\u00d6zlem Keskin","orcid":"https://orcid.org/0000-0002-4202-4049"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ozlem Keskin","raw_affiliation_strings":["Department of Chemical and Biological Engineering, Koc University , Istanbul 34450, Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemical and Biological Engineering, Koc University , Istanbul 34450, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036278069","display_name":"Attila G\u00fcrsoy","orcid":"https://orcid.org/0000-0002-2297-2113"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Attila Gursoy","raw_affiliation_strings":["Department of Computer Engineering, Koc University , Bank AI Center, Istanbul 34450, Turkey"],"raw_orcid":"https://orcid.org/0000-0002-2297-2113","affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Koc University , Bank AI Center, Istanbul 34450, Turkey","institution_ids":["https://openalex.org/I1351752"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5036278069"],"corresponding_institution_ids":["https://openalex.org/I1351752"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3256,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.57527807,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"38","issue":"5","first_page":"1455","last_page":"1457"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.25940001010894775,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.25940001010894775,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.1657000035047531,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.11739999800920486,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.7858535051345825},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5697436928749084},{"id":"https://openalex.org/keywords/molecular-mimicry","display_name":"Molecular mimicry","score":0.5436735153198242},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5359111428260803},{"id":"https://openalex.org/keywords/mimicry","display_name":"Mimicry","score":0.5304543375968933},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5209544897079468},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4930054843425751},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46611741185188293},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.44429469108581543},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4364440143108368},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.23642361164093018},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20794010162353516},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11686375737190247},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.1141546368598938}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.7858535051345825},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5697436928749084},{"id":"https://openalex.org/C2777119779","wikidata":"https://www.wikidata.org/wiki/Q963278","display_name":"Molecular mimicry","level":3,"score":0.5436735153198242},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5359111428260803},{"id":"https://openalex.org/C7863114","wikidata":"https://www.wikidata.org/wiki/Q192627","display_name":"Mimicry","level":2,"score":0.5304543375968933},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5209544897079468},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4930054843425751},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46611741185188293},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.44429469108581543},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4364440143108368},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.23642361164093018},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20794010162353516},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11686375737190247},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.1141546368598938},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018716","descriptor_name":"Molecular Mimicry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018716","descriptor_name":"Molecular Mimicry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018716","descriptor_name":"Molecular Mimicry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btab799","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab799","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/5/1455/42419261/btab799.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34864889","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34864889","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:cdm21054.contentdm.oclc.org:IR/10206","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab799 ","pdf_url":null,"source":{"id":"https://openalex.org/S4306401341","display_name":"Digital Collections portal (Ko\u00e7 University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1351752","host_organization_name":"Ko\u00e7 University","host_organization_lineage":["https://openalex.org/I1351752"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8690264","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8690264","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btab799","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab799","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/38/5/1455/42419261/btab799.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3157186215","display_name":null,"funder_award_id":"HHSN26120080001E","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6453829601","display_name":null,"funder_award_id":"HHSN26120080001E","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320329956","display_name":"Ko\u00e7 \u00dcniversitesi","ror":"https://ror.org/00jzwgz36"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4200591176.pdf","grobid_xml":"https://content.openalex.org/works/W4200591176.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W2000443388","https://openalex.org/W2102245393","https://openalex.org/W2151447241","https://openalex.org/W2158945625","https://openalex.org/W2766371931","https://openalex.org/W2887039385","https://openalex.org/W2896544226","https://openalex.org/W3005685721","https://openalex.org/W3006442734","https://openalex.org/W3006645647","https://openalex.org/W3022285953","https://openalex.org/W3032355258","https://openalex.org/W3046218096","https://openalex.org/W3099269015"],"related_works":["https://openalex.org/W2081926413","https://openalex.org/W2042815515","https://openalex.org/W2055509168","https://openalex.org/W2152546257","https://openalex.org/W3107141572","https://openalex.org/W2080835595","https://openalex.org/W2018720220","https://openalex.org/W1500663296","https://openalex.org/W4252442860","https://openalex.org/W2096139282"],"abstract_inverted_index":{"SUMMARY:":[0],"We":[1],"present":[2],"a":[3],"web-based":[4],"server":[5,121,142,165],"for":[6],"navigating":[7],"and":[8,14,57,60,77,133,144,150],"visualizing":[9],"possible":[10],"interactions":[11,19,127,147],"between":[12,148],"SARS-CoV-2":[13,74,149],"human":[15,47,55,86,100,151],"host":[16,33],"proteins.":[17,34,87],"The":[18,35,53,66,88,94,120,164],"are":[20,64],"obtained":[21],"from":[22],"HMI_Pred":[23],"which":[24],"relies":[25],"on":[26,116],"the":[27,39,46,51,61,72,79,110,117,140],"rationale":[28],"that":[29],"virus":[30],"proteins":[31,56,101],"mimic":[32],"structural":[36],"alignment":[37],"of":[38,45,71,135],"viral":[40,118],"protein":[41,75,152],"with":[42,85,129],"one":[43,70],"side":[44],"protein-protein":[48],"interface":[49,90,158],"determines":[50],"mimicry.":[52],"mimicked":[54,89,126],"predicted":[58],"interactions,":[59],"binding":[62],"sites":[63,115],"presented.":[65],"user":[67,95],"can":[68,96],"choose":[69],"18":[73],"structures":[76],"visualize":[78],"potential":[80],"3D":[81],"complexes":[82],"it":[83],"forms":[84],"is":[91,139,166],"also":[92,122],"provided.":[93],"superimpose":[97],"two":[98],"interacting":[99],"in":[102],"order":[103],"to":[104,109],"see":[105],"whether":[106],"they":[107],"bind":[108],"same":[111],"site":[112],"or":[113],"different":[114],"protein.":[119],"tabulates":[123],"all":[124,146],"available":[125,167],"together":[128],"their":[130],"match":[131],"scores":[132],"number":[134],"aligned":[136],"residues.":[137],"This":[138],"first":[141],"listing":[143],"cataloging":[145],"structures,":[153],"enabled":[154],"by":[155],"our":[156],"innovative":[157],"mimicry":[159],"strategy.":[160],"AVAILABILITY":[161],"AND":[162],"IMPLEMENTATION:":[163],"at":[168],"https://interactome.ku.edu.tr/sars/.":[169]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
