{"id":"https://openalex.org/W3213514782","doi":"https://doi.org/10.1093/bioinformatics/btab769","title":"Explainable multimodal machine learning model for classifying pregnancy drug safety","display_name":"Explainable multimodal machine learning model for classifying pregnancy drug safety","publication_year":2021,"publication_date":"2021-11-05","ids":{"openalex":"https://openalex.org/W3213514782","doi":"https://doi.org/10.1093/bioinformatics/btab769","mag":"3213514782","pmid":"https://pubmed.ncbi.nlm.nih.gov/34791058"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btab769","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab769","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022827292","display_name":"Guy Shtar","orcid":"https://orcid.org/0000-0003-0647-8753"},"institutions":[{"id":"https://openalex.org/I124227911","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982","country_code":"IL","type":"education","lineage":["https://openalex.org/I124227911"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Guy Shtar","raw_affiliation_strings":["Department of Software and Information Systems Engineering, Ben-Gurion University of the Negev , Beer-Shevam, Israel"],"raw_orcid":"https://orcid.org/0000-0003-0647-8753","affiliations":[{"raw_affiliation_string":"Department of Software and Information Systems Engineering, Ben-Gurion University of the Negev , Beer-Shevam, Israel","institution_ids":["https://openalex.org/I124227911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012622155","display_name":"Lior Rokach","orcid":"https://orcid.org/0000-0002-6956-3341"},"institutions":[{"id":"https://openalex.org/I124227911","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982","country_code":"IL","type":"education","lineage":["https://openalex.org/I124227911"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Lior Rokach","raw_affiliation_strings":["Department of Software and Information Systems Engineering, Ben-Gurion University of the Negev , Beer-Shevam, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Software and Information Systems Engineering, Ben-Gurion University of the Negev , Beer-Shevam, Israel","institution_ids":["https://openalex.org/I124227911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086920790","display_name":"Bracha Shapira","orcid":"https://orcid.org/0000-0003-4943-9324"},"institutions":[{"id":"https://openalex.org/I124227911","display_name":"Ben-Gurion University of the Negev","ror":"https://ror.org/05tkyf982","country_code":"IL","type":"education","lineage":["https://openalex.org/I124227911"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Bracha Shapira","raw_affiliation_strings":["Department of Software and Information Systems Engineering, Ben-Gurion University of the Negev , Beer-Shevam, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Software and Information Systems Engineering, Ben-Gurion University of the Negev , Beer-Shevam, Israel","institution_ids":["https://openalex.org/I124227911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056992013","display_name":"Elkana Kohn","orcid":"https://orcid.org/0000-0003-0197-4440"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]},{"id":"https://openalex.org/I4210114157","display_name":"Assaf Harofeh Medical Center","ror":"https://ror.org/02722hp10","country_code":"IL","type":"healthcare","lineage":["https://openalex.org/I4210114157"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Elkana Kohn","raw_affiliation_strings":["Clinical Pharmacology and Toxicology Unit, Drug Consultation Center, Shamir Medical Center (Assaf Harofeh), Zerifin, Affiliated to Sackler Faculty of Medicine, Tel-Aviv University, Tel Aviv, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical Pharmacology and Toxicology Unit, Drug Consultation Center, Shamir Medical Center (Assaf Harofeh), Zerifin, Affiliated to Sackler Faculty of Medicine, Tel-Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192","https://openalex.org/I4210114157"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071401201","display_name":"Matitiahu Berkovitch","orcid":"https://orcid.org/0000-0001-9579-383X"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]},{"id":"https://openalex.org/I4210114157","display_name":"Assaf Harofeh Medical Center","ror":"https://ror.org/02722hp10","country_code":"IL","type":"healthcare","lineage":["https://openalex.org/I4210114157"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Matitiahu Berkovitch","raw_affiliation_strings":["Clinical Pharmacology and Toxicology Unit, Drug Consultation Center, Shamir Medical Center (Assaf Harofeh), Zerifin, Affiliated to Sackler Faculty of Medicine, Tel-Aviv University, Tel Aviv, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical Pharmacology and Toxicology Unit, Drug Consultation Center, Shamir Medical Center (Assaf Harofeh), Zerifin, Affiliated to Sackler Faculty of Medicine, Tel-Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192","https://openalex.org/I4210114157"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035623254","display_name":"Maya Berlin","orcid":"https://orcid.org/0000-0003-4731-742X"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]},{"id":"https://openalex.org/I4210114157","display_name":"Assaf Harofeh Medical Center","ror":"https://ror.org/02722hp10","country_code":"IL","type":"healthcare","lineage":["https://openalex.org/I4210114157"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Maya Berlin","raw_affiliation_strings":["Clinical Pharmacology and Toxicology Unit, Drug Consultation Center, Shamir Medical Center (Assaf Harofeh), Zerifin, Affiliated to Sackler Faculty of Medicine, Tel-Aviv University, Tel Aviv, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinical Pharmacology and Toxicology Unit, Drug Consultation Center, Shamir Medical Center (Assaf Harofeh), Zerifin, Affiliated to Sackler Faculty of Medicine, Tel-Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192","https://openalex.org/I4210114157"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5022827292"],"corresponding_institution_ids":["https://openalex.org/I124227911"],"apc_list":{"value":3478,"currency":"USD","value_usd":3478},"apc_paid":null,"fwci":2.0928,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.87229393,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"38","issue":"4","first_page":"1102","last_page":"1109"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11964","display_name":"Pregnancy and Medication Impact","score":0.9506999850273132,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11964","display_name":"Pregnancy and Medication Impact","score":0.9506999850273132,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.006300000008195639,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11290","display_name":"Preterm Birth and Chorioamnionitis","score":0.0044999998062849045,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.66451096534729},{"id":"https://openalex.org/keywords/pregnancy","display_name":"Pregnancy","score":0.5551366209983826},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5477551221847534},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5326331257820129},{"id":"https://openalex.org/keywords/pharmacovigilance","display_name":"Pharmacovigilance","score":0.4673514664173126},{"id":"https://openalex.org/keywords/safer","display_name":"SAFER","score":0.44305533170700073},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4210663437843323},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4065839946269989},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3739892542362213},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.368598997592926},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.17178001999855042},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.08303284645080566}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.66451096534729},{"id":"https://openalex.org/C2779234561","wikidata":"https://www.wikidata.org/wiki/Q11995","display_name":"Pregnancy","level":2,"score":0.5551366209983826},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5477551221847534},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5326331257820129},{"id":"https://openalex.org/C57658597","wikidata":"https://www.wikidata.org/wiki/Q1550789","display_name":"Pharmacovigilance","level":3,"score":0.4673514664173126},{"id":"https://openalex.org/C2776654903","wikidata":"https://www.wikidata.org/wiki/Q2601463","display_name":"SAFER","level":2,"score":0.44305533170700073},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4210663437843323},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4065839946269989},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3739892542362213},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.368598997592926},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.17178001999855042},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.08303284645080566},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011247","descriptor_name":"Pregnancy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011247","descriptor_name":"Pregnancy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011247","descriptor_name":"Pregnancy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012307","descriptor_name":"Risk Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012307","descriptor_name":"Risk Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012307","descriptor_name":"Risk Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btab769","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btab769","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34791058","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34791058","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.8199999928474426}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W273955616","https://openalex.org/W1715450763","https://openalex.org/W1971903990","https://openalex.org/W1980640063","https://openalex.org/W1997994032","https://openalex.org/W2006901874","https://openalex.org/W2007372567","https://openalex.org/W2037003853","https://openalex.org/W2040332234","https://openalex.org/W2056132907","https://openalex.org/W2071072998","https://openalex.org/W2106398669","https://openalex.org/W2120324887","https://openalex.org/W2127761209","https://openalex.org/W2129228011","https://openalex.org/W2553045786","https://openalex.org/W2592467161","https://openalex.org/W2608362739","https://openalex.org/W2763327376","https://openalex.org/W2766576842","https://openalex.org/W2767891136","https://openalex.org/W2895757710","https://openalex.org/W2922359247","https://openalex.org/W2922588845","https://openalex.org/W2969676387","https://openalex.org/W2980583144","https://openalex.org/W2995109209","https://openalex.org/W3010465641","https://openalex.org/W3010902330","https://openalex.org/W3024429450","https://openalex.org/W3049359994","https://openalex.org/W3094734549","https://openalex.org/W6610017368","https://openalex.org/W6782410892"],"related_works":["https://openalex.org/W2953205341","https://openalex.org/W2092643327","https://openalex.org/W2029935773","https://openalex.org/W235065745","https://openalex.org/W1572215850","https://openalex.org/W2787754950","https://openalex.org/W2352115286","https://openalex.org/W2412818166","https://openalex.org/W599377045","https://openalex.org/W2476350415"],"abstract_inverted_index":{"MOTIVATION:":[0],"Teratogenic":[1],"drugs":[2,66,127,152],"can":[3],"cause":[4],"severe":[5],"fetal":[6],"malformation":[7],"and":[8,46,112,131,133,171,180],"therefore":[9],"have":[10],"critical":[11],"impact":[12],"on":[13,43],"the":[14,17,20,57,87,102,123,147],"health":[15],"of":[16,64,108,115,125,140,149],"fetus,":[18],"yet":[19],"teratogenic":[21],"risks":[22],"are":[23,190],"unknown":[24],"for":[25,37,51,117],"most":[26],"approved":[27],"drugs.":[28],"This":[29],"article":[30],"proposes":[31],"an":[32,48,99,113,137],"explainable":[33],"machine":[34],"learning":[35],"model":[36,88],"classifying":[38],"pregnancy":[39,154],"drug":[40,170],"safety":[41,124,148],"based":[42],"multimodal":[44,53],"data":[45,181,189],"suggests":[47],"orthogonal":[49],"ensemble":[50],"modeling":[52],"data.":[54],"To":[55],"train":[56],"proposed":[58],"model,":[59],"we":[60],"created":[61],"a":[62,76,160,168],"set":[63],"labeled":[65],"by":[67,75,89],"processing":[68],"over":[69],"100":[70],"000":[71],"textual":[72,82,94],"responses":[73],"collected":[74],"large":[77],"teratology":[78],"information":[79,83],"service.":[80],"Structured":[81],"is":[84,139,155,182],"incorporated":[85],"into":[86],"applying":[90],"clustering":[91],"analysis":[92],"to":[93,144,166],"features.":[95],"RESULTS:":[96],"We":[97,157],"report":[98],"area":[100],"under":[101],"receiver":[103],"operating":[104],"characteristic":[105],"curve":[106],"(AUC)":[107],"0.891":[109],"using":[110],"cross-validation":[111],"AUC":[114],"0.904":[116],"cross-expert":[118],"validation.":[119],"Our":[120],"findings":[121],"suggest":[122,134],"two":[126],"during":[128,153],"pregnancy,":[129],"Varenicline":[130],"Mebeverine,":[132],"that":[135,163],"Meloxicam,":[136],"NSAID,":[138],"higher":[141],"risk;":[142],"according":[143],"existing":[145],"data,":[146],"these":[150],"three":[151],"unknown.":[156],"also":[158],"present":[159],"web-based":[161],"application":[162],"enables":[164],"physicians":[165],"examine":[167],"specific":[169],"its":[172],"risk":[173],"factors.":[174],"AVAILABILITY":[175],"AND":[176],"IMPLEMENTATION:":[177],"The":[178],"code":[179],"available":[183,191],"from":[184],"https://github.com/goolig/drug_safety_pregnancy_prediction.git.":[185],"SUPPLEMENTARY":[186],"INFORMATION:":[187],"Supplementary":[188],"at":[192],"Bioinformatics":[193],"online.":[194]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":3}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
